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Type 'q()' to quit R. > x <- array(list(50 + ,148 + ,47 + ,148 + ,50 + ,160 + ,55 + ,150 + ,52 + ,152 + ,51 + ,150 + ,47 + ,150 + ,45 + ,152 + ,39 + ,157 + ,41 + ,153 + ,52 + ,159 + ,52 + ,153 + ,45 + ,157 + ,45 + ,153 + ,52 + ,158 + ,51 + ,155 + ,44 + ,157 + ,44 + ,155 + ,55 + ,160 + ,55 + ,155 + ,59 + ,159 + ,59 + ,155 + ,53 + ,158 + ,50 + ,155 + ,50 + ,158 + ,49 + ,155 + ,53 + ,161 + ,54 + ,158 + ,51 + ,161 + ,52 + ,158 + ,54 + ,160 + ,55 + ,158 + ,75 + ,162 + ,75 + ,158 + ,63 + ,160 + ,64 + ,158 + ,56 + ,160 + ,53 + ,158 + ,59 + ,157 + ,55 + ,158 + ,53 + ,162 + ,52 + ,158 + ,51 + ,156 + ,51 + ,158 + ,58 + ,161 + ,51 + ,159 + ,63 + ,163 + ,59 + ,159 + ,56 + ,163 + ,57 + ,159 + ,52 + ,163 + ,57 + ,160 + ,58 + ,166 + ,60 + ,160 + ,54 + ,164 + ,53 + ,160 + ,60 + ,162 + ,59 + ,160 + ,57 + ,163 + ,59 + ,160 + ,57 + ,162 + ,56 + ,160 + ,56 + ,165 + ,57 + ,160 + ,47 + ,163 + ,47 + ,160 + ,45 + ,163 + ,45 + ,160 + ,53 + ,164 + ,51 + ,160 + ,53 + ,162 + ,53 + ,160 + ,52 + ,163 + ,53 + ,160 + 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+ ,73 + ,180 + ,101 + ,183 + ,100 + ,180 + ,78 + ,183 + ,80 + ,180 + ,73 + ,183 + ,74 + ,180 + ,69 + ,182 + ,70 + ,180 + ,69 + ,180 + ,71 + ,180 + ,76 + ,183 + ,75 + ,180 + ,83 + ,180 + ,80 + ,180 + ,83 + ,184 + ,83 + ,181 + ,103 + ,185 + ,101 + ,182 + ,82 + ,182 + ,85 + ,183 + ,69 + ,183 + ,70 + ,183 + ,59 + ,182 + ,61 + ,183 + ,84 + ,184 + ,86 + ,183 + ,84 + ,183 + ,90 + ,183 + ,96 + ,184 + ,94 + ,183 + ,88 + ,184 + ,86 + ,183 + ,92 + ,187 + ,101 + ,185 + ,102 + ,185 + ,107 + ,185 + ,97 + ,189 + ,98 + ,185 + ,88 + ,189 + ,87 + ,185 + ,87 + ,185 + ,89 + ,185 + ,90 + ,188 + ,91 + ,185 + ,65 + ,187 + ,67 + ,188 + ,85 + ,191 + ,83 + ,188 + ,96 + ,191 + ,95 + ,188 + ,88 + ,185 + ,93 + ,188 + ,76 + ,197 + ,75 + ,200) + ,dim=c(4 + ,180) + ,dimnames=list(c('h' + ,'w' + ,'rh' + ,'rw') + ,1:180)) > y <- array(NA,dim=c(4,180),dimnames=list(c('h','w','rh','rw'),1:180)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = 'scores' > xlab = 'CARE Variable Names' > main = 'Height and weight against reported' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/ > #Source of accompanying publication: > # > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/wessaorg/rcomp/tmp/131tp1338545373.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/wessaorg/rcomp/tmp/2vdcl1338545373.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [,3] [,4] [1,] 39.0 148.0 41.0 148 [2,] 55.5 164.0 55.0 161 [3,] 63.5 169.5 63.0 168 [4,] 75.0 178.0 74.5 175 [5,] 103.0 197.0 101.0 188 $n [1] 180 180 180 180 $conf [,1] [,2] [,3] [,4] [1,] 61.20356 167.8513 60.70356 166.3513 [2,] 65.79644 171.1487 65.29644 169.6487 $out [1] 119 166 57 107 124 200 $group [1] 1 1 2 3 3 4 $names [1] "h" "w" "rh" "rw" > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/34cph1338545373.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/4nfhs1338545373.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/56mxt1338545374.tab") > > try(system("convert tmp/131tp1338545373.ps tmp/131tp1338545373.png",intern=TRUE)) character(0) > try(system("convert tmp/2vdcl1338545373.ps tmp/2vdcl1338545373.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.028 0.240 1.261