R version 2.13.0 (2011-04-13)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i486-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> x <- array(list(49
+ ,NA
+ ,66
+ ,65
+ ,50
+ ,NA
+ ,52
+ ,56
+ ,62
+ ,NA
+ ,55
+ ,NA
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+ ,NA
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+ ,85
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+ ,62
+ ,66
+ ,63
+ ,63
+ ,78
+ ,77
+ ,83
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+ ,66
+ ,68
+ ,81
+ ,82
+ ,80
+ ,78
+ ,74
+ ,71
+ ,70
+ ,75
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+ ,68
+ ,65
+ ,66
+ ,79
+ ,76
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+ ,68
+ ,70
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+ ,86
+ ,65
+ ,64
+ ,69
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+ ,79
+ ,79
+ ,65
+ ,64
+ ,66
+ ,70
+ ,74
+ ,73
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+ ,58
+ ,71
+ ,71
+ ,55
+ ,56
+ ,70
+ ,68
+ ,61
+ ,61
+ ,75
+ ,70
+ ,62
+ ,64
+ ,76
+ ,76
+ ,76
+ ,77
+ ,68
+ ,69
+ ,75
+ ,76
+ ,69
+ ,73
+ ,54
+ ,58
+ ,76
+ ,75
+ ,66
+ ,67
+ ,56
+ ,58)
+ ,dim=c(2
+ ,200)
+ ,dimnames=list(c('weight'
+ ,'repwt')
+ ,1:200))
>  y <- array(NA,dim=c(2,200),dimnames=list(c('weight','repwt'),1:200))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par8 = 'TRUE'
> par7 = '0.95'
> par6 = '0.0'
> par5 = 'paired'
> par4 = 'T-Test'
> par3 = '2'
> par2 = '1'
> par1 = 'two.sided'
> ylab = 'Y-Axis Title'
> xlab = 'X-Axis Title'
> main = 'Boxplots Title'
> par8 <- 'TRUE'
> par7 <- '0.95'
> par6 <- '0.0'
> par5 <- 'paired'
> par4 <- 'T-Test'
> par3 <- '2'
> par2 <- '1'
> par1 <- 'two.sided'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: aston2
> #To cite this work: Ian E. Holliday, 2012, T-Tests (v1.0.2) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_Tests%20to%20Compare%20Two%20Means.wasp/
> #Source of accompanying publication: 
> #
> par2 <- as.numeric(par2)
> par3 <- as.numeric(par3)
> par4 <- as.character(par4)
> par5 <- as.character(par5)
> par6 <- as.numeric(par6)
> par7 <- as.numeric(par7)
> par8 <- as.logical(par8)
> if ( par5 == 'unpaired') paired <- FALSE else paired <- TRUE
> x <- t(y)
> if(par8){
+ postscript(file="/var/wessaorg/rcomp/tmp/1otbk1338545806.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ (r<-boxplot(x ,xlab=xlab,ylab=ylab,main=main,notch=FALSE,col=2))
+ dev.off()
+ }
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> if( par4 == 'Wilcoxon-Mann_Whitney'){
+ a<-table.start()
+ a <- table.row.start(a)
+ a <- table.element(a,'Wilcoxon Test',3,TRUE)
+ a <- table.row.end(a)
+ a <- table.row.start(a)
+ a <- table.element(a,'',1,TRUE)
+ a <- table.element(a,'Statistic',1,TRUE)
+ a <- table.element(a,'P-value',1,TRUE)
+ a <- table.row.end(a)
+ W <- wilcox.test(x[,par2],x[,par3],alternative=par1, paired = paired)
+ a<-table.row.start(a)
+ a<-table.element(a,'Wilcoxon Test',1,TRUE)
+ a<-table.element(a,W$statistic[[1]])
+ a<-table.element(a,round(W$p.value, digits=5) )
+ a<-table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/2559u1338545806.tab") 
+ }
> if( par4 == 'T-Test')
+ {
+ T <- t.test(x[,par2],x[,par3],alternative=par1, paired=paired, mu=par6, conf.level=par7)
+ a<-table.start()
+ a <- table.row.start(a)
+ a <- table.element(a,'T-Test',3,TRUE)
+ a <- table.row.end(a)
+ if(paired){
+ a <- table.row.start(a)
+ a <- table.element(a,'Difference: Mean1 - Mean2',1,TRUE)
+ a<-table.element(a,round(T$estimate, digits=5) )
+ a <- table.row.end(a)
+ }
+ if(!paired){
+ a <- table.row.start(a)
+ a <- table.element(a,'Mean1',1,TRUE)
+ a<-table.element(a,round(T$estimate[1], digits=5) )
+ a <- table.row.end(a)
+ a <- table.row.start(a)
+ a <- table.element(a,'Mean2',1,TRUE)
+ a<-table.element(a,round(T$estimate[2], digits=5) )
+ a <- table.row.end(a)
+ }
+ a <- table.row.start(a)
+ a <- table.element(a,'T Statistic',1,TRUE)
+ a<-table.element(a,round(T$statistic, digits=5) )
+ a <- table.row.end(a)
+ a <- table.row.start(a)
+ a <- table.element(a,'P-value',1,TRUE)
+ a<-table.element(a,round(T$p.value, digits=5) )
+ a <- table.row.end(a)
+ a <- table.row.start(a)
+ a <- table.element(a,'Lower Confidence Limit',1,TRUE)
+ a<-table.element(a,round(T$conf.int[1], digits=5) )
+ a <- table.row.end(a)
+ a<-table.row.start(a)
+ a <- table.element(a,'Upper Confidence Limit',1,TRUE)
+ a<-table.element(a,round(T$conf.int[2], digits=5) )
+ a <- table.row.end(a)
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/398111338545806.tab") 
+ }
> a<-table.start()
> a <- table.row.start(a)
> a <- table.element(a,'Standard Deviations',3,TRUE)
> a <- table.row.end(a)
> a <- table.row.start(a)
> a <- table.element(a,'Variable 1',1,TRUE)
> a<-table.element(a,round(sd(x[,par2], na.rm=TRUE), digits=5) )
> a <- table.row.end(a)
> a <- table.row.start(a)
> a <- table.element(a,'Variable 2',1,TRUE)
> a<-table.element(a,round(sd(x[,par3], na.rm=TRUE), digits=5) )
> a <- table.row.end(a)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/4eluo1338545806.tab") 
> 
> try(system("convert tmp/1otbk1338545806.ps tmp/1otbk1338545806.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  0.560   0.146   0.701