R version 2.13.0 (2011-04-13) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i486-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > par9 = 'cases' > par8 = 'COLLES all' > par7 = 'all' > par6 = 'bachelor' > par5 = 'all' > par4 = 'FALSE' > par3 = 'FALSE' > par2 = 'ALL' > par1 = 'ward' > ylab = 'height' > xlab = 'cases or variables' > main = 'Dendrogram' > par9 <- 'cases' > par8 <- 'COLLES all' > par7 <- 'all' > par6 <- 'bachelor' > par5 <- 'all' > par4 <- 'FALSE' > par3 <- 'FALSE' > par2 <- 'ALL' > par1 <- 'ward' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa, P., (2012), Hierarchical Clustering (v1.0.4) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > x <- as.data.frame(read.table(file='http://www.wessa.net/download/utaut.csv',sep=',',header=T)) > x$U25 <- 6-x$U25 > if(par5 == 'female') x <- x[x$Gender==0,] > if(par5 == 'male') x <- x[x$Gender==1,] > if(par6 == 'prep') x <- x[x$Pop==1,] > if(par6 == 'bachelor') x <- x[x$Pop==0,] > if(par7 != 'all') { + x <- x[x$Year==as.numeric(par7),] + } > cAc <- with(x,cbind( A1, A2, A3, A4, A5, A6, A7, A8, A9,A10)) > cAs <- with(x,cbind(A11,A12,A13,A14,A15,A16,A17,A18,A19,A20)) > cA <- cbind(cAc,cAs) > cCa <- with(x,cbind(C1,C3,C5,C7, C9,C11,C13,C15,C17,C19,C21,C23,C25,C27,C29,C31,C33,C35,C37,C39,C41,C43,C45,C47)) > cCp <- with(x,cbind(C2,C4,C6,C8,C10,C12,C14,C16,C18,C20,C22,C24,C26,C28,C30,C32,C34,C36,C38,C40,C42,C44,C46,C48)) > cC <- cbind(cCa,cCp) > cU <- with(x,cbind(U1,U2,U3,U4,U5,U6,U7,U8,U9,U10,U11,U12,U13,U14,U15,U16,U17,U18,U19,U20,U21,U22,U23,U24,U25,U26,U27,U28,U29,U30,U31,U32,U33)) > cE <- with(x,cbind(BC,NNZFG,MRT,AFL,LPM,LPC,W,WPA)) > cX <- with(x,cbind(X1,X2,X3,X4,X5,X6,X7,X8,X9,X10,X11,X12,X13,X14,X15,X16,X17,X18)) > if (par8=='ATTLES connected') x <- cAc > if (par8=='ATTLES separate') x <- cAs > if (par8=='ATTLES all') x <- cA > if (par8=='COLLES actuals') x <- cCa > if (par8=='COLLES preferred') x <- cCp > if (par8=='COLLES all') x <- cC > if (par8=='CSUQ') x <- cU > if (par8=='Learning Activities') x <- cE > if (par8=='Exam Items') x <- cX > ncol <- length(x[1,]) > for (jjj in 1:ncol) { + x <- x[!is.na(x[,jjj]),] + } > par3 <- as.logical(par3) > par4 <- as.logical(par4) > if (par3 == TRUE){ + dum = xlab + xlab = ylab + ylab = dum + } > if (par9=='variables') { + x <- t(x) + } else { + ncol <- length(x[1,]) + colnames(x) <- 1:ncol + } > hc <- hclust(dist(x),method=par1) > d <- as.dendrogram(hc) > str(d) --[dendrogram w/ 2 branches and 382 members at h = 214] |--[dendrogram w/ 2 branches and 127 members at h = 62.2] | |--[dendrogram w/ 2 branches and 51 members at h = 25.1] | | |--[dendrogram w/ 2 branches and 12 members at h = 11.8] | | | |--[dendrogram w/ 2 branches and 5 members at h = 6.61] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.29] | | | | | |--leaf 263 | | | | | `--leaf 272 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.66] | | | | |--leaf 182 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.47] | | | | |--leaf 114 | | | | `--leaf 196 | | | `--[dendrogram w/ 2 branches and 7 members at h = 8.53] | | | |--leaf 295 | | | `--[dendrogram w/ 2 branches and 6 members at h = 7.12] | | | |--[dendrogram w/ 2 branches and 4 members at h = 5.14] | | | | |--leaf 351 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 4.73] | | | | |--leaf 247 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.87] | | | | |--leaf 337 | | | | `--leaf 349 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.39] | | | |--leaf 75 | | | `--leaf 124 | | `--[dendrogram w/ 2 branches and 39 members at h = 16.8] | | |--[dendrogram w/ 2 branches and 15 members at h = 11.3] | | | |--[dendrogram w/ 2 branches and 4 members at h = 7.62] | | | | |--leaf 175 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.95] | | | | |--leaf 8 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | | | |--leaf 92 | | | | `--leaf 176 | | | `--[dendrogram w/ 2 branches and 11 members at h = 10.9] | | | |--[dendrogram w/ 2 branches and 7 members at h = 7.78] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 7.07] | | | | | |--leaf 79 | | | | | `--leaf 128 | | | | `--[dendrogram w/ 2 branches and 5 members at h = 7.51] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.74] | | | | | |--leaf 55 | | | | | `--leaf 181 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.78] | | | | |--leaf 82 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.29] | | | | |--leaf 161 | | | | `--leaf 187 | | | `--[dendrogram w/ 2 branches and 4 members at h = 8.19] | | | |--leaf 269 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.34] | | | |--leaf 260 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | |--leaf 13 | | | `--leaf 150 | | `--[dendrogram w/ 2 branches and 24 members at h = 14.5] | | |--[dendrogram w/ 2 branches and 9 members at h = 9.49] | | | |--[dendrogram w/ 2 branches and 4 members at h = 6.99] | | | | |--leaf 145 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.98] | | | | |--leaf 19 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.2] | | | | |--leaf 186 | | | | `--leaf 323 | | | `--[dendrogram w/ 2 branches and 5 members at h = 7.6] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.83] | | | | |--leaf 172 | | | | `--leaf 266 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.84] | | | |--leaf 25 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | | |--leaf 109 | | | `--leaf 251 | | `--[dendrogram w/ 2 branches and 15 members at h = 11.3] | | |--[dendrogram w/ 2 branches and 3 members at h = 7.42] | | | |--leaf 144 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | | |--leaf 98 | | | `--leaf 160 | | `--[dendrogram w/ 2 branches and 12 members at h = 8.68] | | |--[dendrogram w/ 2 branches and 6 members at h = 6.38] | | | |--[dendrogram w/ 2 branches and 3 members at h = 4.96] | | | | |--leaf 126 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | | | |--leaf 10 | | | | `--leaf 137 | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.09] | | | |--leaf 94 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.24] | | | |--leaf 62 | | | `--leaf 168 | | `--[dendrogram w/ 2 branches and 6 members at h = 8] | | |--[dendrogram w/ 2 branches and 3 members at h = 5.51] | | | |--leaf 122 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.2] | | | |--leaf 105 | | | `--leaf 185 | | `--[dendrogram w/ 2 branches and 3 members at h = 5.79] | | |--leaf 120 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | |--leaf 66 | | `--leaf 80 | `--[dendrogram w/ 2 branches and 76 members at h = 28.8] | |--[dendrogram w/ 2 branches and 53 members at h = 18.5] | | |--[dendrogram w/ 2 branches and 13 members at h = 10] | | | |--[dendrogram w/ 2 branches and 9 members at h = 7.27] | | | | |--[dendrogram w/ 2 branches and 4 members at h = 5.37] | | | | | |--leaf 340 | | | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.34] | | | | | |--leaf 311 | | | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.32] | | | | | |--leaf 313 | | | | | `--leaf 327 | | | | `--[dendrogram w/ 2 branches and 5 members at h = 6.15] | | | | |--[dendrogram w/ 2 branches and 3 members at h = 4.66] | | | | | |--leaf 360 | | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.12] | | | | | |--leaf 238 | | | | | `--leaf 332 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.48] | | | | |--leaf 199 | | | | `--leaf 297 | | | `--[dendrogram w/ 2 branches and 4 members at h = 7.44] | | | |--leaf 302 | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.04] | | | |--leaf 358 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.47] | | | |--leaf 256 | | | `--leaf 283 | | `--[dendrogram w/ 2 branches and 40 members at h = 16.4] | | |--[dendrogram w/ 2 branches and 17 members at h = 10.5] | | | |--[dendrogram w/ 2 branches and 3 members at h = 6.78] | | | | |--leaf 279 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.16] | | | | |--leaf 262 | | | | `--leaf 355 | | | `--[dendrogram w/ 2 branches and 14 members at h = 10.1] | | | |--[dendrogram w/ 2 branches and 4 members at h = 6.76] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | | | |--leaf 304 | | | | | `--leaf 333 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5] | | | | |--leaf 294 | | | | `--leaf 309 | | | `--[dendrogram w/ 2 branches and 10 members at h = 8.95] | | | |--[dendrogram w/ 2 branches and 5 members at h = 6.89] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.74] | | | | | |--leaf 129 | | | | | `--leaf 210 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.99] | | | | |--leaf 366 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.24] | | | | |--leaf 229 | | | | `--leaf 316 | | | `--[dendrogram w/ 2 branches and 5 members at h = 7.34] | | | |--[dendrogram w/ 2 branches and 3 members at h = 6.16] | | | | |--leaf 318 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5] | | | | |--leaf 220 | | | | `--leaf 354 | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.16] | | | |--leaf 287 | | | `--leaf 342 | | `--[dendrogram w/ 2 branches and 23 members at h = 11.4] | | |--[dendrogram w/ 2 branches and 14 members at h = 9.51] | | | |--[dendrogram w/ 2 branches and 5 members at h = 6.5] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | | | | |--leaf 173 | | | | | `--leaf 289 | | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.35] | | | | |--leaf 222 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | | |--leaf 207 | | | | `--leaf 275 | | | `--[dendrogram w/ 2 branches and 9 members at h = 6.96] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.1] | | | | |--leaf 288 | | | | `--leaf 300 | | | `--[dendrogram w/ 2 branches and 7 members at h = 6.31] | | | |--[dendrogram w/ 2 branches and 3 members at h = 5.59] | | | | |--leaf 267 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.1] | | | | |--leaf 209 | | | | `--leaf 211 | | | `--[dendrogram w/ 2 branches and 4 members at h = 5.63] | | | |--leaf 268 | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.34] | | | |--leaf 18 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.12] | | | |--leaf 1 | | | `--leaf 169 | | `--[dendrogram w/ 2 branches and 9 members at h = 9.86] | | |--[dendrogram w/ 2 branches and 5 members at h = 7.34] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | | |--leaf 141 | | | | `--leaf 156 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.3] | | | |--leaf 239 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | | |--leaf 301 | | | `--leaf 331 | | `--[dendrogram w/ 2 branches and 4 members at h = 7.94] | | |--[dendrogram w/ 2 branches and 2 members at h = 6] | | | |--leaf 284 | | | `--leaf 330 | | `--[dendrogram w/ 2 branches and 2 members at h = 6.4] | | |--leaf 201 | | `--leaf 249 | `--[dendrogram w/ 2 branches and 23 members at h = 22.4] | |--[dendrogram w/ 2 branches and 12 members at h = 11.3] | | |--[dendrogram w/ 2 branches and 2 members at h = 7.81] | | | |--leaf 194 | | | `--leaf 281 | | `--[dendrogram w/ 2 branches and 10 members at h = 11.1] | | |--[dendrogram w/ 2 branches and 2 members at h = 8.49] | | | |--leaf 248 | | | `--leaf 261 | | `--[dendrogram w/ 2 branches and 8 members at h = 9.99] | | |--[dendrogram w/ 2 branches and 6 members at h = 7.15] | | | |--[dendrogram w/ 2 branches and 2 members at h = 6.08] | | | | |--leaf 116 | | | | `--leaf 258 | | | `--[dendrogram w/ 2 branches and 4 members at h = 6.34] | | | |--leaf 347 | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.83] | | | |--leaf 242 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.1] | | | |--leaf 277 | | | `--leaf 336 | | `--[dendrogram w/ 2 branches and 2 members at h = 7.55] | | |--leaf 69 | | `--leaf 244 | `--[dendrogram w/ 2 branches and 11 members at h = 12.8] | |--[dendrogram w/ 2 branches and 4 members at h = 9] | | |--leaf 305 | | `--[dendrogram w/ 2 branches and 3 members at h = 6.41] | | |--leaf 335 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.58] | | |--leaf 226 | | `--leaf 375 | `--[dendrogram w/ 2 branches and 7 members at h = 10.1] | |--leaf 379 | `--[dendrogram w/ 2 branches and 6 members at h = 7.58] | |--leaf 298 | `--[dendrogram w/ 2 branches and 5 members at h = 7.35] | |--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | |--leaf 214 | | `--leaf 348 | `--[dendrogram w/ 2 branches and 3 members at h = 6.35] | |--leaf 233 | `--[dendrogram w/ 2 branches and 2 members at h = 5.39] | |--leaf 224 | `--leaf 292 `--[dendrogram w/ 2 branches and 255 members at h = 80.7] |--[dendrogram w/ 2 branches and 48 members at h = 32.5] | |--[dendrogram w/ 2 branches and 12 members at h = 16.8] | | |--[dendrogram w/ 2 branches and 8 members at h = 10.7] | | | |--[dendrogram w/ 2 branches and 2 members at h = 7.55] | | | | |--leaf 96 | | | | `--leaf 195 | | | `--[dendrogram w/ 2 branches and 6 members at h = 9.09] | | | |--[dendrogram w/ 2 branches and 3 members at h = 6.56] | | | | |--leaf 352 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.4] | | | | |--leaf 7 | | | | `--leaf 274 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.87] | | | |--leaf 325 | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.08] | | | |--leaf 23 | | | `--leaf 153 | | `--[dendrogram w/ 2 branches and 4 members at h = 10.9] | | |--[dendrogram w/ 2 branches and 2 members at h = 8.54] | | | |--leaf 285 | | | `--leaf 376 | | `--[dendrogram w/ 2 branches and 2 members at h = 8.89] | | |--leaf 40 | | `--leaf 216 | `--[dendrogram w/ 2 branches and 36 members at h = 28.7] | |--[dendrogram w/ 2 branches and 2 members at h = 0] | | |--leaf 35 | | `--leaf 110 | `--[dendrogram w/ 2 branches and 34 members at h = 20.9] | |--[dendrogram w/ 2 branches and 11 members at h = 15.5] | | |--[dendrogram w/ 2 branches and 2 members at h = 12.2] | | | |--leaf 15 | | | `--leaf 308 | | `--[dendrogram w/ 2 branches and 9 members at h = 12.9] | | |--[dendrogram w/ 2 branches and 7 members at h = 10.4] | | | |--[dendrogram w/ 2 branches and 3 members at h = 8.54] | | | | |--leaf 36 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 7.07] | | | | |--leaf 276 | | | | `--leaf 373 | | | `--[dendrogram w/ 2 branches and 4 members at h = 9.08] | | | |--leaf 346 | | | `--[dendrogram w/ 2 branches and 3 members at h = 7.77] | | | |--leaf 218 | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.63] | | | |--leaf 81 | | | `--leaf 290 | | `--[dendrogram w/ 2 branches and 2 members at h = 11.5] | | |--leaf 59 | | `--leaf 343 | `--[dendrogram w/ 2 branches and 23 members at h = 16.4] | |--[dendrogram w/ 2 branches and 16 members at h = 11.8] | | |--[dendrogram w/ 2 branches and 4 members at h = 0] | | | |--leaf 282 | | | `--[dendrogram w/ 2 branches and 3 members at h = 0] | | | |--leaf 189 | | | `--[dendrogram w/ 2 branches and 2 members at h = 0] | | | |--leaf 132 | | | `--leaf 151 | | `--[dendrogram w/ 2 branches and 12 members at h = 9.13] | | |--[dendrogram w/ 2 branches and 2 members at h = 7.35] | | | |--leaf 28 | | | `--leaf 237 | | `--[dendrogram w/ 2 branches and 10 members at h = 8.6] | | |--[dendrogram w/ 2 branches and 6 members at h = 7.31] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.74] | | | | |--leaf 125 | | | | `--leaf 356 | | | `--[dendrogram w/ 2 branches and 4 members at h = 6.71] | | | |--leaf 270 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.48] | | | |--leaf 359 | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.16] | | | |--leaf 306 | | | `--leaf 368 | | `--[dendrogram w/ 2 branches and 4 members at h = 7.31] | | |--leaf 31 | | `--[dendrogram w/ 2 branches and 3 members at h = 6.53] | | |--leaf 16 | | `--[dendrogram w/ 2 branches and 2 members at h = 5.2] | | |--leaf 89 | | `--leaf 115 | `--[dendrogram w/ 2 branches and 7 members at h = 12.7] | |--[dendrogram w/ 2 branches and 3 members at h = 9.4] | | |--leaf 112 | | `--[dendrogram w/ 2 branches and 2 members at h = 6.32] | | |--leaf 106 | | `--leaf 131 | `--[dendrogram w/ 2 branches and 4 members at h = 10.5] | |--[dendrogram w/ 2 branches and 2 members at h = 7.21] | | |--leaf 33 | | `--leaf 57 | `--[dendrogram w/ 2 branches and 2 members at h = 9.33] | |--leaf 44 | `--leaf 74 `--[dendrogram w/ 2 branches and 207 members at h = 56.6] |--[dendrogram w/ 2 branches and 48 members at h = 19.2] | |--[dendrogram w/ 2 branches and 17 members at h = 13.1] | | |--[dendrogram w/ 2 branches and 6 members at h = 8.52] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.29] | | | | |--leaf 291 | | | | `--leaf 293 | | | `--[dendrogram w/ 2 branches and 4 members at h = 6.88] | | | |--leaf 370 | | | `--[dendrogram w/ 2 branches and 3 members at h = 5.86] | | | |--leaf 339 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | | |--leaf 243 | | | `--leaf 254 | | `--[dendrogram w/ 2 branches and 11 members at h = 9.11] | | |--[dendrogram w/ 2 branches and 2 members at h = 7] | | | |--leaf 204 | | | `--leaf 372 | | `--[dendrogram w/ 2 branches and 9 members at h = 8.51] | | |--[dendrogram w/ 2 branches and 7 members at h = 6.54] | | | |--[dendrogram w/ 2 branches and 3 members at h = 5.44] | | | | |--leaf 353 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.87] | | | | |--leaf 149 | | | | `--leaf 219 | | | `--[dendrogram w/ 2 branches and 4 members at h = 5.75] | | | |--leaf 223 | | | `--[dendrogram w/ 2 branches and 3 members at h = 4.81] | | | |--leaf 217 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.12] | | | |--leaf 225 | | | `--leaf 255 | | `--[dendrogram w/ 2 branches and 2 members at h = 7.42] | | |--leaf 312 | | `--leaf 377 | `--[dendrogram w/ 2 branches and 31 members at h = 14.8] | |--[dendrogram w/ 2 branches and 14 members at h = 11] | | |--[dendrogram w/ 2 branches and 10 members at h = 7.57] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.29] | | | | |--leaf 212 | | | | `--leaf 362 | | | `--[dendrogram w/ 2 branches and 8 members at h = 6.47] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | | | |--leaf 230 | | | | `--leaf 322 | | | `--[dendrogram w/ 2 branches and 6 members at h = 6.33] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | | | |--leaf 61 | | | | `--leaf 361 | | | `--[dendrogram w/ 2 branches and 4 members at h = 5.46] | | | |--leaf 215 | | | `--[dendrogram w/ 2 branches and 3 members at h = 4.44] | | | |--leaf 345 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.87] | | | |--leaf 280 | | | `--leaf 314 | | `--[dendrogram w/ 2 branches and 4 members at h = 7.9] | | |--leaf 296 | | `--[dendrogram w/ 2 branches and 3 members at h = 6.68] | | |--leaf 250 | | `--[dendrogram w/ 2 branches and 2 members at h = 5.39] | | |--leaf 213 | | `--leaf 334 | `--[dendrogram w/ 2 branches and 17 members at h = 13.8] | |--[dendrogram w/ 2 branches and 7 members at h = 10.9] | | |--[dendrogram w/ 2 branches and 3 members at h = 8.68] | | | |--leaf 378 | | | `--[dendrogram w/ 2 branches and 2 members at h = 6.63] | | | |--leaf 259 | | | `--leaf 315 | | `--[dendrogram w/ 2 branches and 4 members at h = 9.02] | | |--leaf 357 | | `--[dendrogram w/ 2 branches and 3 members at h = 7.77] | | |--leaf 265 | | `--[dendrogram w/ 2 branches and 2 members at h = 7.28] | | |--leaf 329 | | `--leaf 341 | `--[dendrogram w/ 2 branches and 10 members at h = 13.1] | |--leaf 240 | `--[dendrogram w/ 2 branches and 9 members at h = 9.83] | |--leaf 321 | `--[dendrogram w/ 2 branches and 8 members at h = 8.26] | |--[dendrogram w/ 2 branches and 2 members at h = 6.08] | | |--leaf 241 | | `--leaf 344 | `--[dendrogram w/ 2 branches and 6 members at h = 7.35] | |--leaf 326 | `--[dendrogram w/ 2 branches and 5 members at h = 6.73] | |--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | |--leaf 232 | | `--leaf 380 | `--[dendrogram w/ 2 branches and 3 members at h = 6.24] | |--leaf 203 | `--[dendrogram w/ 2 branches and 2 members at h = 5] | |--leaf 221 | `--leaf 338 `--[dendrogram w/ 2 branches and 159 members at h = 45.5] |--[dendrogram w/ 2 branches and 100 members at h = 20.3] | |--[dendrogram w/ 2 branches and 32 members at h = 13.4] | | |--[dendrogram w/ 2 branches and 11 members at h = 8.58] | | | |--[dendrogram w/ 2 branches and 3 members at h = 6.09] | | | | |--leaf 324 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | | |--leaf 139 | | | | `--leaf 371 | | | `--[dendrogram w/ 2 branches and 8 members at h = 8.14] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.74] | | | | |--leaf 53 | | | | `--leaf 264 | | | `--[dendrogram w/ 2 branches and 6 members at h = 6.51] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | | |--leaf 148 | | | | `--leaf 253 | | | `--[dendrogram w/ 2 branches and 4 members at h = 5.49] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.36] | | | | |--leaf 47 | | | | `--leaf 234 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.58] | | | |--leaf 41 | | | `--leaf 364 | | `--[dendrogram w/ 2 branches and 21 members at h = 12.3] | | |--[dendrogram w/ 2 branches and 12 members at h = 8.32] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.39] | | | | |--leaf 320 | | | | `--leaf 369 | | | `--[dendrogram w/ 2 branches and 10 members at h = 6.99] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.92] | | | | |--leaf 34 | | | | `--leaf 310 | | | `--[dendrogram w/ 2 branches and 8 members at h = 6.19] | | | |--[dendrogram w/ 2 branches and 3 members at h = 5.19] | | | | |--leaf 68 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4] | | | | |--leaf 27 | | | | `--leaf 72 | | | `--[dendrogram w/ 2 branches and 5 members at h = 5.81] | | | |--[dendrogram w/ 2 branches and 3 members at h = 4.84] | | | | |--leaf 363 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.24] | | | | |--leaf 60 | | | | `--leaf 97 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5] | | | |--leaf 48 | | | `--leaf 154 | | `--[dendrogram w/ 2 branches and 9 members at h = 10.6] | | |--[dendrogram w/ 2 branches and 6 members at h = 7.84] | | | |--leaf 21 | | | `--[dendrogram w/ 2 branches and 5 members at h = 6.62] | | | |--leaf 208 | | | `--[dendrogram w/ 2 branches and 4 members at h = 5.65] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | | | |--leaf 142 | | | | `--leaf 188 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.1] | | | |--leaf 32 | | | `--leaf 113 | | `--[dendrogram w/ 2 branches and 3 members at h = 8.88] | | |--leaf 273 | | `--[dendrogram w/ 2 branches and 2 members at h = 5.74] | | |--leaf 184 | | `--leaf 350 | `--[dendrogram w/ 2 branches and 68 members at h = 17.2] | |--[dendrogram w/ 2 branches and 21 members at h = 12.7] | | |--[dendrogram w/ 2 branches and 7 members at h = 8.96] | | | |--[dendrogram w/ 2 branches and 2 members at h = 5.83] | | | | |--leaf 231 | | | | `--leaf 271 | | | `--[dendrogram w/ 2 branches and 5 members at h = 7.31] | | | |--[dendrogram w/ 2 branches and 2 members at h = 6] | | | | |--leaf 205 | | | | `--leaf 303 | | | `--[dendrogram w/ 2 branches and 3 members at h = 6.56] | | | |--leaf 381 | | | `--[dendrogram w/ 2 branches and 2 members at h = 5.29] | | | |--leaf 246 | | | `--leaf 382 | | `--[dendrogram w/ 2 branches and 14 members at h = 10.9] | | |--[dendrogram w/ 2 branches and 8 members at h = 7.05] | | | |--[dendrogram w/ 2 branches and 2 members at h = 4.58] | | | | |--leaf 202 | | | | `--leaf 286 | | | `--[dendrogram w/ 2 branches and 6 members at h = 5.14] | | | |--leaf 257 | | | `--[dendrogram w/ 2 branches and 5 members at h = 4.91] | | | |--leaf 227 | | | `--[dendrogram w/ 2 branches and 4 members at h = 4.62] | | | |--leaf 299 | | | `--[dendrogram w/ 2 branches and 3 members at h = 4.44] | | | |--leaf 235 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.87] | | | |--leaf 252 | | | `--leaf 365 | | `--[dendrogram w/ 2 branches and 6 members at h = 8] | | |--leaf 50 | | `--[dendrogram w/ 2 branches and 5 members at h = 6.03] | | |--[dendrogram w/ 2 branches and 3 members at h = 4.4] | | | |--leaf 9 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.74] | | | |--leaf 39 | | | `--leaf 236 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | |--leaf 67 | | `--leaf 91 | `--[dendrogram w/ 2 branches and 47 members at h = 13.2] | |--[dendrogram w/ 2 branches and 22 members at h = 8.51] | | |--[dendrogram w/ 2 branches and 9 members at h = 6.1] | | | |--[dendrogram w/ 2 branches and 3 members at h = 4.79] | | | | |--leaf 138 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.46] | | | | |--leaf 197 | | | | `--leaf 328 | | | `--[dendrogram w/ 2 branches and 6 members at h = 5.2] | | | |--[dendrogram w/ 2 branches and 4 members at h = 4.34] | | | | |--[dendrogram w/ 2 branches and 2 members at h = 3.32] | | | | | |--leaf 171 | | | | | `--leaf 180 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.74] | | | | |--leaf 12 | | | | `--leaf 165 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.58] | | | |--leaf 58 | | | `--leaf 73 | | `--[dendrogram w/ 2 branches and 13 members at h = 7.14] | | |--[dendrogram w/ 2 branches and 6 members at h = 5.48] | | | |--[dendrogram w/ 2 branches and 2 members at h = 3] | | | | |--leaf 152 | | | | `--leaf 164 | | | `--[dendrogram w/ 2 branches and 4 members at h = 3.54] | | | |--[dendrogram w/ 2 branches and 2 members at h = 3] | | | | |--leaf 52 | | | | `--leaf 127 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.16] | | | |--leaf 90 | | | `--leaf 245 | | `--[dendrogram w/ 2 branches and 7 members at h = 6.55] | | |--[dendrogram w/ 2 branches and 3 members at h = 4.76] | | | |--leaf 64 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4] | | | |--leaf 84 | | | `--leaf 85 | | `--[dendrogram w/ 2 branches and 4 members at h = 5.12] | | |--leaf 108 | | `--[dendrogram w/ 2 branches and 3 members at h = 4.57] | | |--leaf 157 | | `--[dendrogram w/ 2 branches and 2 members at h = 3] | | |--leaf 22 | | `--leaf 307 | `--[dendrogram w/ 2 branches and 25 members at h = 10.2] | |--[dendrogram w/ 2 branches and 5 members at h = 7.09] | | |--[dendrogram w/ 2 branches and 2 members at h = 4.8] | | | |--leaf 136 | | | `--leaf 170 | | `--[dendrogram w/ 2 branches and 3 members at h = 5.08] | | |--leaf 155 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.24] | | |--leaf 135 | | `--leaf 143 | `--[dendrogram w/ 2 branches and 20 members at h = 9.23] | |--[dendrogram w/ 2 branches and 12 members at h = 7.93] | | |--[dendrogram w/ 2 branches and 8 members at h = 6.25] | | | |--[dendrogram w/ 2 branches and 3 members at h = 5.19] | | | | |--leaf 167 | | | | `--[dendrogram w/ 2 branches and 2 members at h = 4] | | | | |--leaf 130 | | | | `--leaf 174 | | | `--[dendrogram w/ 2 branches and 5 members at h = 5.37] | | | |--[dendrogram w/ 2 branches and 2 members at h = 3.87] | | | | |--leaf 177 | | | | `--leaf 317 | | | `--[dendrogram w/ 2 branches and 3 members at h = 4.14] | | | |--leaf 76 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3.32] | | | |--leaf 49 | | | `--leaf 228 | | `--[dendrogram w/ 2 branches and 4 members at h = 6.29] | | |--leaf 190 | | `--[dendrogram w/ 2 branches and 3 members at h = 5.63] | | |--leaf 367 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.24] | | |--leaf 104 | | `--leaf 198 | `--[dendrogram w/ 2 branches and 8 members at h = 8.57] | |--[dendrogram w/ 2 branches and 6 members at h = 6.77] | | |--[dendrogram w/ 2 branches and 3 members at h = 5.46] | | | |--leaf 88 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.58] | | | |--leaf 43 | | | `--leaf 206 | | `--[dendrogram w/ 2 branches and 3 members at h = 5.55] | | |--leaf 2 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | |--leaf 38 | | `--leaf 147 | `--[dendrogram w/ 2 branches and 2 members at h = 6.86] | |--leaf 3 | `--leaf 65 `--[dendrogram w/ 2 branches and 59 members at h = 23.1] |--[dendrogram w/ 2 branches and 7 members at h = 17.3] | |--[dendrogram w/ 2 branches and 3 members at h = 11.2] | | |--leaf 45 | | `--[dendrogram w/ 2 branches and 2 members at h = 9.9] | | |--leaf 30 | | `--leaf 77 | `--[dendrogram w/ 2 branches and 4 members at h = 13.8] | |--leaf 37 | `--[dendrogram w/ 2 branches and 3 members at h = 11.1] | |--leaf 374 | `--[dendrogram w/ 2 branches and 2 members at h = 8.12] | |--leaf 17 | `--leaf 200 `--[dendrogram w/ 2 branches and 52 members at h = 19.7] |--[dendrogram w/ 2 branches and 19 members at h = 14] | |--[dendrogram w/ 2 branches and 11 members at h = 8.13] | | |--[dendrogram w/ 2 branches and 2 members at h = 5.83] | | | |--leaf 56 | | | `--leaf 146 | | `--[dendrogram w/ 2 branches and 9 members at h = 7.59] | | |--leaf 121 | | `--[dendrogram w/ 2 branches and 8 members at h = 6.79] | | |--[dendrogram w/ 2 branches and 5 members at h = 4.46] | | | |--leaf 162 | | | `--[dendrogram w/ 2 branches and 4 members at h = 4.13] | | | |--leaf 100 | | | `--[dendrogram w/ 2 branches and 3 members at h = 3.71] | | | |--leaf 140 | | | `--[dendrogram w/ 2 branches and 2 members at h = 3] | | | |--leaf 26 | | | `--leaf 163 | | `--[dendrogram w/ 2 branches and 3 members at h = 6.15] | | |--leaf 159 | | `--[dendrogram w/ 2 branches and 2 members at h = 5] | | |--leaf 14 | | `--leaf 102 | `--[dendrogram w/ 2 branches and 8 members at h = 9.68] | |--[dendrogram w/ 2 branches and 4 members at h = 7.29] | | |--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | | |--leaf 118 | | | `--leaf 319 | | `--[dendrogram w/ 2 branches and 2 members at h = 5.66] | | |--leaf 63 | | `--leaf 78 | `--[dendrogram w/ 2 branches and 4 members at h = 8.17] | |--[dendrogram w/ 2 branches and 2 members at h = 6.4] | | |--leaf 103 | | `--leaf 179 | `--[dendrogram w/ 2 branches and 2 members at h = 6.93] | |--leaf 191 | `--leaf 278 `--[dendrogram w/ 2 branches and 33 members at h = 15.3] |--[dendrogram w/ 2 branches and 7 members at h = 11.4] | |--[dendrogram w/ 2 branches and 3 members at h = 8] | | |--leaf 134 | | `--[dendrogram w/ 2 branches and 2 members at h = 7.75] | | |--leaf 4 | | `--leaf 24 | `--[dendrogram w/ 2 branches and 4 members at h = 8.46] | |--leaf 54 | `--[dendrogram w/ 2 branches and 3 members at h = 6.9] | |--leaf 183 | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | |--leaf 51 | `--leaf 83 `--[dendrogram w/ 2 branches and 26 members at h = 14.7] |--[dendrogram w/ 2 branches and 13 members at h = 10.6] | |--[dendrogram w/ 2 branches and 5 members at h = 8.02] | | |--[dendrogram w/ 2 branches and 3 members at h = 5.28] | | | |--leaf 6 | | | `--[dendrogram w/ 2 branches and 2 members at h = 4.36] | | | |--leaf 87 | | | `--leaf 133 | | `--[dendrogram w/ 2 branches and 2 members at h = 5.48] | | |--leaf 70 | | `--leaf 158 | `--[dendrogram w/ 2 branches and 8 members at h = 9.51] | |--[dendrogram w/ 2 branches and 3 members at h = 7.03] | | |--leaf 20 | | `--[dendrogram w/ 2 branches and 2 members at h = 6.32] | | |--leaf 117 | | `--leaf 193 | `--[dendrogram w/ 2 branches and 5 members at h = 8.32] | |--[dendrogram w/ 2 branches and 3 members at h = 5.61] | | |--leaf 5 | | `--[dendrogram w/ 2 branches and 2 members at h = 4.69] | | |--leaf 101 | | `--leaf 192 | `--[dendrogram w/ 2 branches and 2 members at h = 5.66] | |--leaf 71 | `--leaf 119 `--[dendrogram w/ 2 branches and 13 members at h = 13.4] |--[dendrogram w/ 2 branches and 3 members at h = 9.77] | |--leaf 166 | `--[dendrogram w/ 2 branches and 2 members at h = 7] | |--leaf 86 | `--leaf 107 `--[dendrogram w/ 2 branches and 10 members at h = 12.8] |--leaf 95 `--[dendrogram w/ 2 branches and 9 members at h = 9.82] |--[dendrogram w/ 2 branches and 6 members at h = 7.56] | |--[dendrogram w/ 2 branches and 2 members at h = 5.57] | | |--leaf 46 | | `--leaf 111 | `--[dendrogram w/ 2 branches and 4 members at h = 6.41] | |--[dendrogram w/ 2 branches and 2 members at h = 4.9] | | |--leaf 29 | | `--leaf 99 | `--[dendrogram w/ 2 branches and 2 members at h = 4.9] | |--leaf 42 | `--leaf 93 `--[dendrogram w/ 2 branches and 3 members at h = 7.74] |--leaf 178 `--[dendrogram w/ 2 branches and 2 members at h = 6.71] |--leaf 11 `--leaf 123 > mysub <- paste('Method: ',par1) > postscript(file="/var/wessaorg/rcomp/tmp/1fkwm1335889656.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > if (par4 == TRUE){ + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } > dev.off() null device 1 > if (par2 != 'ALL'){ + if (par3 == TRUE){ + ylab = 'cluster' + } else { + xlab = 'cluster' + } + par2 <- as.numeric(par2) + memb <- cutree(hc, k = par2) + cent <- NULL + for(k in 1:par2){ + cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) + } + hc1 <- hclust(dist(cent),method=par1, members = table(memb)) + de <- as.dendrogram(hc1) + postscript(file="/var/wessaorg/rcomp/tmp/2rasz1335889656.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) + if (par4 == TRUE){ + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } + dev.off() + str(de) + } > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Summary of Dendrogram',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Label',header=TRUE) > a<-table.element(a,'Height',header=TRUE) > a<-table.row.end(a) > num <- length(x[,1])-1 > for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,hc$labels[i]) + a<-table.element(a,hc$height[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3iawq1335889656.tab") > if (par2 != 'ALL'){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Label',header=TRUE) + a<-table.element(a,'Height',header=TRUE) + a<-table.row.end(a) + num <- par2-1 + for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,i) + a<-table.element(a,hc1$height[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/4arn91335889656.tab") + } > > try(system("convert tmp/1fkwm1335889656.ps tmp/1fkwm1335889656.png",intern=TRUE)) character(0) > try(system("convert tmp/2rasz1335889656.ps tmp/2rasz1335889656.png",intern=TRUE)) convert: unable to open image `tmp/2rasz1335889656.ps': No such file or directory @ blob.c/OpenBlob/2480. convert: missing an image filename `tmp/2rasz1335889656.png' @ convert.c/ConvertImageCommand/2838. character(0) Warning message: running command 'convert tmp/2rasz1335889656.ps tmp/2rasz1335889656.png' had status 1 > > > proc.time() user system elapsed 3.038 0.170 3.203