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Type 'q()' to quit R. > x <- array(list(45,52,50,55,49,80,55,45,39,60,68,34,69,45,56,68,58,26,48,70,34,85,50,54,76,55,49,40,51,55,53,50,36,71,62,55,46,70,50,55,47,60,50,65,44,66,50,55,29,90,49,55,26,60,79,35,53,55,53,26,72,14,35,45,42,35,37,65,46,35,48,60,46,60,49,60,65,65,52,45,75,20,58,50,43,60,60,48,43,40,51,55,70,54,69,40,65,40,63,34,44,60,61,30,40,75,62,24,59,30,47,80,50,60,50,46,65,35,54,60,44,75,66,54,34,78,74,20,57,45,60,60,36,70,50,35,60,20,45,60,55,20,44,50,57,50,33,75,30,70,64,20,49,45,76,20,40,50,48,55,65,15,50,26,70,25,78,30,44,60,48,40,52,40,40,50),dim=c(2,88),dimnames=list(c('ADD','Grade'),1:88)) > y <- array(NA,dim=c(2,88),dimnames=list(c('ADD','Grade'),1:88)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = 'Grade' > xlab = 'ADD score' > main = 'Relationship between grade and ADD score' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/ > #Source of accompanying publication: > # > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/fisher/rcomp/tmp/1dm6x1353938488.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/fisher/rcomp/tmp/2vobj1353938488.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [1,] 26.0 14 [2,] 44.5 35 [3,] 50.0 53 [4,] 60.5 60 [5,] 79.0 90 $n [1] 88 88 $conf [,1] [,2] [1,] 47.30514 48.78929 [2,] 52.69486 57.21071 $out numeric(0) $group numeric(0) $names [1] "ADD" "Grade" > dev.off() null device 1 > > #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/fisher/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/3b5sk1353938488.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/fisher/rcomp/tmp/4re8d1353938488.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } Warning messages: 1: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 2: sd() is deprecated. Use sapply(*, sd) instead. 3: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 4: sd() is deprecated. Use sapply(*, sd) instead. > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/5s1nh1353938488.tab") > > try(system("convert tmp/1dm6x1353938488.ps tmp/1dm6x1353938488.png",intern=TRUE)) character(0) > try(system("convert tmp/2vobj1353938488.ps tmp/2vobj1353938488.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.306 0.362 1.650