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Type 'q()' to quit R. > x <- array(list(27,52,18,55,19,80,20,45,29,60,46,34,27,45,23,68,29,26,38,70,20,85,37,54,32,55,26,40,40,55,30,50,26,71,23,55,27,70,38,55,25,60,33,65,45,66,34,55,20,90,24,55,26,60,26,35,39,55,27,26,18,14,34,45,25,35,26,65,28,35,21,60,39,60,25,60,29,65,37,45,34,20,30,50,28,60,25,48,27,40,33,55,30,54,26,40,18,40,21,34,39,60,36,30,32,75,23,24,27,30,45,80,24,60,29,46,21,35,28,60,37,75,22,54,31,78,32,20,20,45,33,60,32,70,18,35,44,20,24,60,21,20,29,50,30,50,37,75,33,70,25,20,19,45,16,20,31,50,29,55,37,15,41,26,28,25,19,30,28,60,33,40,32,40,28,50),dim=c(2,88),dimnames=list(c('Age','Grade'),1:88)) > y <- array(NA,dim=c(2,88),dimnames=list(c('Age','Grade'),1:88)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = 'Grade' > xlab = 'Maternal Age' > main = 'CARE DATA' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/ > #Source of accompanying publication: > # > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/fisher/rcomp/tmp/1bcn71353938592.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/fisher/rcomp/tmp/2a6d91353938592.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [1,] 16 14 [2,] 24 35 [3,] 28 53 [4,] 33 60 [5,] 46 90 $n [1] 88 88 $conf [,1] [,2] [1,] 26.48414 48.78929 [2,] 29.51586 57.21071 $out numeric(0) $group numeric(0) $names [1] "Age" "Grade" > dev.off() null device 1 > > #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/fisher/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/375nx1353938592.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/fisher/rcomp/tmp/4hkcr1353938592.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } Warning messages: 1: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 2: sd() is deprecated. Use sapply(*, sd) instead. 3: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 4: sd() is deprecated. Use sapply(*, sd) instead. > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/58syx1353938592.tab") > > try(system("convert tmp/1bcn71353938592.ps tmp/1bcn71353938592.png",intern=TRUE)) character(0) > try(system("convert tmp/2a6d91353938592.ps tmp/2a6d91353938592.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.268 0.368 1.613