R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(75
+ ,73
+ ,77
+ ,77
+ ,75
+ ,75
+ ,74
+ ,78
+ ,77
+ ,75
+ ,75
+ ,74
+ ,78
+ ,78
+ ,77
+ ,77
+ ,75
+ ,78
+ ,79
+ ,78
+ ,77
+ ,75
+ ,78
+ ,79
+ ,78
+ ,77
+ ,75
+ ,78
+ ,80
+ ,79
+ ,77
+ ,75
+ ,78
+ ,80
+ ,79
+ ,78
+ ,75
+ ,78
+ ,81
+ ,79
+ ,78
+ ,75
+ ,79
+ ,81
+ ,79
+ ,78
+ ,75
+ ,79
+ ,81
+ ,79
+ ,80
+ ,77
+ ,79
+ ,82
+ ,80
+ ,80
+ ,77
+ ,79
+ ,82
+ ,81
+ ,80
+ ,78
+ ,80
+ ,82
+ ,81
+ ,80
+ ,78
+ ,81
+ ,82
+ ,81
+ ,80
+ ,78
+ ,81
+ ,82
+ ,82
+ ,80
+ ,78
+ ,81
+ ,83
+ ,82
+ ,80
+ ,79
+ ,82
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+ ,82
+ ,80
+ ,79
+ ,82
+ ,83
+ ,82
+ ,80
+ ,79
+ ,82
+ ,83
+ ,82
+ ,81
+ ,80
+ ,82
+ ,83
+ ,82
+ ,81
+ ,80
+ ,83
+ ,83
+ ,82
+ ,81
+ ,81
+ ,83
+ ,83
+ ,82
+ ,82
+ ,81
+ ,83
+ ,83
+ ,82
+ ,82
+ ,81
+ ,83
+ ,84
+ ,83
+ ,82
+ ,82
+ ,84
+ ,84
+ ,83
+ ,82
+ ,82
+ ,84
+ ,84
+ ,83
+ ,82
+ ,82
+ ,84
+ ,84
+ ,84
+ ,82
+ ,82
+ ,84
+ ,85
+ ,84
+ ,83
+ ,82
+ ,84
+ ,86
+ ,84
+ ,83
+ ,82
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+ ,86
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+ ,84
+ ,82
+ ,85
+ ,86
+ ,85
+ ,84
+ ,82
+ ,86
+ ,87
+ ,85
+ ,84
+ ,82
+ ,86
+ ,87
+ ,85
+ ,84
+ ,84
+ ,86
+ ,87
+ ,85
+ ,84
+ ,85
+ ,86
+ ,88
+ ,85
+ ,84
+ ,85
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+ ,88
+ ,85
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+ ,85
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+ ,88
+ ,85
+ ,85
+ ,86
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+ ,85
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+ ,88
+ ,85
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+ ,88
+ ,86
+ ,86
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+ ,88
+ ,86
+ ,86
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+ ,86
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+ ,89
+ ,87
+ ,86
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+ ,89
+ ,87
+ ,86
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+ ,88
+ ,89
+ ,87
+ ,86
+ ,88
+ ,88
+ ,89
+ ,87
+ ,86
+ ,89
+ ,88
+ ,89
+ ,87
+ ,86
+ ,89
+ ,89
+ ,89
+ ,87
+ ,86
+ ,89
+ ,89
+ ,89
+ ,87
+ ,86
+ ,90
+ ,89
+ ,90
+ ,88
+ ,87
+ ,90
+ ,90
+ ,90
+ ,88
+ ,87
+ ,90
+ ,90
+ ,90
+ ,88
+ ,87
+ ,90
+ ,90
+ ,91
+ ,88
+ ,87
+ ,90
+ ,90
+ ,91
+ ,88
+ ,87
+ ,91
+ ,90
+ ,91
+ ,89
+ ,87
+ ,91
+ ,90
+ ,91
+ ,89
+ ,88
+ ,91
+ ,91
+ ,91
+ ,89
+ ,88
+ ,91
+ ,91
+ ,91
+ ,89
+ ,88
+ ,91
+ ,92
+ ,92
+ ,90
+ ,88
+ ,91
+ ,92
+ ,92
+ ,90
+ ,89
+ ,91
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+ ,89
+ ,91
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+ ,91
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+ ,92
+ ,91
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+ ,92
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+ ,92
+ ,92
+ ,89
+ ,92
+ ,95
+ ,93
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+ ,89
+ ,92
+ ,95
+ ,93
+ ,92
+ ,89
+ ,92
+ ,95
+ ,93
+ ,92
+ ,89
+ ,92
+ ,95
+ ,93
+ ,92
+ ,90
+ ,92
+ ,95
+ ,94
+ ,92
+ ,90
+ ,92
+ ,95
+ ,94
+ ,92
+ ,90
+ ,93
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+ ,92
+ ,90
+ ,93
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+ ,90
+ ,93
+ ,96
+ ,94
+ ,93
+ ,90
+ ,93
+ ,96
+ ,95
+ ,93
+ ,90
+ ,93
+ ,96
+ ,95
+ ,93
+ ,90
+ ,93
+ ,96
+ ,95
+ ,93
+ ,90
+ ,95
+ ,97
+ ,95
+ ,94
+ ,91
+ ,95
+ ,97
+ ,96
+ ,94
+ ,91
+ ,95
+ ,97
+ ,96
+ ,94
+ ,91
+ ,95
+ ,98
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+ ,95
+ ,91
+ ,95
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+ ,95
+ ,91
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+ ,95
+ ,92
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+ ,97
+ ,95
+ ,92
+ ,95
+ ,99
+ ,97
+ ,95
+ ,92
+ ,95
+ ,99
+ ,97
+ ,95
+ ,92
+ ,95
+ ,99
+ ,97
+ ,95
+ ,92
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+ ,92
+ ,95
+ ,100
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+ ,97
+ ,92
+ ,96
+ ,100
+ ,97
+ ,97
+ ,94
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+ ,100
+ ,98
+ ,97
+ ,94
+ ,97
+ ,101
+ ,98
+ ,97
+ ,94
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+ ,102
+ ,98
+ ,97
+ ,95
+ ,97
+ ,102
+ ,98
+ ,97
+ ,95
+ ,97
+ ,102
+ ,98
+ ,97
+ ,95
+ ,97
+ ,102
+ ,98
+ ,97
+ ,96
+ ,97
+ ,103
+ ,98
+ ,97
+ ,96
+ ,97
+ ,103
+ ,98
+ ,98
+ ,97
+ ,97
+ ,103
+ ,99
+ ,99
+ ,97
+ ,97
+ ,104
+ ,99
+ ,99
+ ,97
+ ,98
+ ,104
+ ,99
+ ,99
+ ,98
+ ,98
+ ,105
+ ,99
+ ,99
+ ,98
+ ,99
+ ,105
+ ,100
+ ,100
+ ,98
+ ,100
+ ,105
+ ,100
+ ,100
+ ,98
+ ,100
+ ,106
+ ,100
+ ,100
+ ,98
+ ,100
+ ,106
+ ,100
+ ,100
+ ,98
+ ,102
+ ,106
+ ,100
+ ,101
+ ,98
+ ,102
+ ,106
+ ,101
+ ,102
+ ,98
+ ,102
+ ,108
+ ,101
+ ,103
+ ,98
+ ,102
+ ,108
+ ,101
+ ,104
+ ,98
+ ,102
+ ,108
+ ,101
+ ,104
+ ,98
+ ,102
+ ,108
+ ,102
+ ,104
+ ,98
+ ,102
+ ,109
+ ,102
+ ,104
+ ,99
+ ,102
+ ,109
+ ,102
+ ,105
+ ,99
+ ,102
+ ,109
+ ,102
+ ,105
+ ,99
+ ,104
+ ,109
+ ,102
+ ,105
+ ,99
+ ,104
+ ,109
+ ,102
+ ,106
+ ,102
+ ,104
+ ,109
+ ,102
+ ,107
+ ,102
+ ,104
+ ,109
+ ,103
+ ,108
+ ,102
+ ,105
+ ,109
+ ,103
+ ,109
+ ,102
+ ,105
+ ,110
+ ,103
+ ,109
+ ,102
+ ,105
+ ,110
+ ,103
+ ,109
+ ,102
+ ,105
+ ,111
+ ,104
+ ,109
+ ,104
+ ,105
+ ,111
+ ,104
+ ,109
+ ,104
+ ,105
+ ,112
+ ,105
+ ,110
+ ,104
+ ,106
+ ,112
+ ,106
+ ,111
+ ,105
+ ,106
+ ,112
+ ,108
+ ,112
+ ,105
+ ,108
+ ,114
+ ,108
+ ,112
+ ,106
+ ,109
+ ,114
+ ,108
+ ,113
+ ,NA
+ ,NA
+ ,NA
+ ,NA
+ ,NA)
+ ,dim=c(5
+ ,132)
+ ,dimnames=list(c('WJ7ARD'
+ ,'WJ7AMA'
+ ,'WJ7AWL'
+ ,'WJ7AKN'
+ ,'WJ7ASK')
+ ,1:132))
>  y <- array(NA,dim=c(5,132),dimnames=list(c('WJ7ARD','WJ7AMA','WJ7AWL','WJ7AKN','WJ7ASK'),1:132))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'FALSE'
> par1 = '3'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE DATA'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1v6vm1350220682.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2f7171350220682.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
      [,1] [,2]  [,3] [,4] [,5]
[1,]  75.0   73  77.0   77   75
[2,]  84.0   82  86.0   87   85
[3,]  89.0   91  93.0   92   91
[4,]  95.5   97 102.5   98   97
[5,] 106.0  109 114.0  108  113

$n
[1] 131 131 131 131 131

$conf
         [,1]     [,2]     [,3]    [,4]     [,5]
[1,] 87.41248 88.92932 90.72225 90.4815 89.34346
[2,] 90.58752 93.07068 95.27775 93.5185 92.65654

$out
numeric(0)

$group
numeric(0)

$names
[1] "WJ7ARD" "WJ7AMA" "WJ7AWL" "WJ7AKN" "WJ7ASK"

> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,round(r$stats[j,i], digits=2))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/36n981350220682.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(r$conf[1,i], digits=2))
+ a<-table.element(a, round(r$stats[3,i], digits=2))
+ a<-table.element(a,round(r$conf[2,i], digits=2))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4u3261350220682.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(mean(z[i], trim=par3/100, na.rm=TRUE), digits=2))
+ a<-table.element(a,round(sd(z[i], na.rm=TRUE), digits=2))
+ a<-table.row.end(a)
+ }
Warning messages:
1: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
2: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
3: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
4: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
5: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
6: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
7: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
8: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
9: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
10: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/58vx91350220683.tab") 
> 
> try(system("convert tmp/1v6vm1350220682.ps tmp/1v6vm1350220682.png",intern=TRUE))
character(0)
> try(system("convert tmp/2f7171350220682.ps tmp/2f7171350220682.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.784   0.256   2.030