R version 2.15.3 (2013-03-01) -- "Security Blanket" Copyright (C) 2013 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i686-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(8.5,8.5,8.5,8.6,8.6,8.4,8.2,8,8,8,8,7.9,7.9,7.9,7.9,8,7.9,7.4,7.2,7,6.9,7.1,7.2,7.2,7.1,6.9,6.8,6.8,6.8,6.9,7.1,7.2,7.2,7.1,7.1,7.2,7.5,7.7,7.8,7.7,7.7,7.8,8,8.1,8.1,8,8.1,8.2,8.4,8.5,8.5,8.5,8.5,8.5,8.4,8.3,8.2,8.1,7.9,7.6,7.3,7.1,7,7.1,7.1,7.1,7.3,7.3,7.3,7.2,7.2,7.1) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P., (2012), Standard Deviation Plot (v1.0.2) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_sdplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 72 > (np <- floor(n / par1)) [1] 6 > arr <- array(NA,dim=c(par1,np+1)) > ari <- array(0,dim=par1) > j <- 0 > for (i in 1:n) + { + j = j + 1 + ari[j] = ari[j] + 1 + arr[j,ari[j]] <- x[i] + if (j == par1) j = 0 + } > ari [1] 6 6 6 6 6 6 6 6 6 6 6 6 > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 8.5 7.9 7.1 7.5 8.4 7.3 NA [2,] 8.5 7.9 6.9 7.7 8.5 7.1 NA [3,] 8.5 7.9 6.8 7.8 8.5 7.0 NA [4,] 8.6 8.0 6.8 7.7 8.5 7.1 NA [5,] 8.6 7.9 6.8 7.7 8.5 7.1 NA [6,] 8.4 7.4 6.9 7.8 8.5 7.1 NA [7,] 8.2 7.2 7.1 8.0 8.4 7.3 NA [8,] 8.0 7.0 7.2 8.1 8.3 7.3 NA [9,] 8.0 6.9 7.2 8.1 8.2 7.3 NA [10,] 8.0 7.1 7.1 8.0 8.1 7.2 NA [11,] 8.0 7.2 7.1 8.1 7.9 7.2 NA [12,] 7.9 7.2 7.2 8.2 7.6 7.1 NA > arr.sd <- array(NA,dim=par1) > arr.range <- array(NA,dim=par1) > arr.iqr <- array(NA,dim=par1) > for (j in 1:par1) + { + arr.sd[j] <- sqrt(var(arr[j,],na.rm=TRUE)) + arr.range[j] <- max(arr[j,],na.rm=TRUE) - min(arr[j,],na.rm=TRUE) + arr.iqr[j] <- quantile(arr[j,],0.75,na.rm=TRUE) - quantile(arr[j,],0.25,na.rm=TRUE) + } > overall.sd <- sqrt(var(x)) > overall.range <- max(x) - min(x) > overall.iqr <- quantile(x,0.75) - quantile(x,0.25) > postscript(file="/var/wessaorg/rcomp/tmp/1v8ln1366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.sd,type='b',ylab='S.D.',main='Standard Deviation Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.sd,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2xzzr1366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.range,type='b',ylab='range',main='Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.range,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3jzfk1366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.iqr,type='b',ylab='IQR',main='Interquartile Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.iqr,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/49ehz1366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(t(arr)) > names(z) <- c(1:par1) > (boxplot(z,notch=TRUE,col='grey',xlab='Periodic Index',ylab='Value',main='Notched Box Plots - Periodic Subseries')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [1,] 7.1 6.9 6.80 6.80 6.8 6.9 7.10 7.00 6.90 7.1 7.10 7.1 [2,] 7.3 7.1 7.00 7.10 7.1 7.1 7.20 7.20 7.20 7.1 7.20 7.2 [3,] 7.7 7.8 7.85 7.85 7.8 7.6 7.65 7.65 7.65 7.6 7.55 7.4 [4,] 8.4 8.5 8.50 8.50 8.5 8.4 8.20 8.10 8.10 8.0 8.00 7.9 [5,] 8.5 8.5 8.50 8.60 8.6 8.5 8.40 8.30 8.20 8.1 8.10 8.2 $n [1] 6 6 6 6 6 6 6 6 6 6 6 6 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 6.990464 6.896955 6.882452 6.946955 6.896955 6.761458 7.004968 7.069471 [2,] 8.409536 8.703045 8.817548 8.753045 8.703045 8.438542 8.295032 8.230529 [,9] [,10] [,11] [,12] [1,] 7.069471 7.019471 7.033974 6.948477 [2,] 8.230529 8.180529 8.066026 7.851523 $out numeric(0) $group numeric(0) $names [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" "12" Warning message: In bxp(list(stats = c(7.1, 7.3, 7.7, 8.4, 8.5, 6.9, 7.1, 7.8, 8.5, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/51ls61366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(arr) > names(z) <- c(1:np) > (boxplot(z,notch=TRUE,col='grey',xlab='Block Index',ylab='Value',main='Notched Box Plots - Sequential Blocks')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 7.9 6.90 6.80 7.5 7.90 7.00 NA [2,] 8.0 7.15 6.85 7.7 8.15 7.10 NA [3,] 8.3 7.30 7.10 7.9 8.40 7.15 NA [4,] 8.5 7.90 7.15 8.1 8.50 7.30 NA [5,] 8.6 8.00 7.20 8.2 8.50 7.30 NA $n [1] 12 12 12 12 12 12 0 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 8.071947 6.95792 6.963168 7.717557 8.240363 7.058779 NA [2,] 8.528053 7.64208 7.236832 8.082443 8.559637 7.241221 NA $out [1] 7.6 $group [1] 5 $names [1] "1" "2" "3" "4" "5" "6" NA Warning message: In bxp(list(stats = c(7.9, 8, 8.3, 8.5, 8.6, 6.9, 7.15, 7.3, 7.9, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/64o2n1366965653.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(cbind(arr.sd,arr.range,arr.iqr)) > names(z) <- list('S.D.','Range','IQR') > (boxplot(z,notch=TRUE,col='grey',ylab='Overall Variability',main='Notched Box Plots')) $stats [,1] [,2] [,3] [1,] 0.4457204 1.00 0.625 [2,] 0.5212283 1.20 0.850 [3,] 0.5733882 1.35 0.925 [4,] 0.7002184 1.65 1.100 [5,] 0.7305249 1.80 1.150 $n [1] 12 12 12 $conf [,1] [,2] [,3] [1,] 0.4917496 1.144752 0.8109733 [2,] 0.6550267 1.555248 1.0390267 $out numeric(0) $group numeric(0) $names [1] "S.D." "Range" "IQR" Warning message: In bxp(list(stats = c(0.445720390678581, 0.521228324471571, 0.573388176501622, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > > try(system("convert tmp/1v8ln1366965653.ps tmp/1v8ln1366965653.png",intern=TRUE)) character(0) > try(system("convert tmp/2xzzr1366965653.ps tmp/2xzzr1366965653.png",intern=TRUE)) character(0) > try(system("convert tmp/3jzfk1366965653.ps tmp/3jzfk1366965653.png",intern=TRUE)) character(0) > try(system("convert tmp/49ehz1366965653.ps tmp/49ehz1366965653.png",intern=TRUE)) character(0) > try(system("convert tmp/51ls61366965653.ps tmp/51ls61366965653.png",intern=TRUE)) character(0) > try(system("convert tmp/64o2n1366965653.ps tmp/64o2n1366965653.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 4.329 0.803 5.114