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Type 'q()' to quit R. > x <- c(37,30,47,35,30,43,82,40,47,19,52,136,80,42,54,66,81,63,137,72,107,58,36,52,79,77,54,84,48,96,83,66,61,53,30,74,69,59,42,65,70,100,63,105,82,81,75,102,121,98,76,77,63,37,35,23,40,29,37,51,20,28,13,22,25,13,16,13,16,17,9,17,25,14,8,7,10,7,10,3) > par9 = '1' > par8 = '2' > par7 = '1' > par6 = '3' > par5 = '12' > par4 = '0' > par3 = '1' > par2 = '1' > par1 = 'FALSE' > par9 <- '1' > par8 <- '2' > par7 <- '1' > par6 <- '3' > par5 <- '12' > par4 <- '0' > par3 <- '1' > par2 <- '1' > par1 <- 'FALSE' > #'GNU S' R Code compiled by R2WASP v. 1.2.327 () > #Author: root > #To cite this work: Wessa P., (2013), ARIMA Backward Selection (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_arimabackwardselection.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > library(lattice) > if (par1 == 'TRUE') par1 <- TRUE > if (par1 == 'FALSE') par1 <- FALSE > par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter > par3 <- as.numeric(par3) #degree of non-seasonal differencing > par4 <- as.numeric(par4) #degree of seasonal differencing > par5 <- as.numeric(par5) #seasonal period > par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial > par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial > par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial > par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial > armaGR <- function(arima.out, names, n){ + try1 <- arima.out$coef + try2 <- sqrt(diag(arima.out$var.coef)) + try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) + dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) + try.data.frame[,1] <- try1 + for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] + try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] + try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) + vector <- rep(NA,length(names)) + vector[is.na(try.data.frame[,4])] <- 0 + maxi <- which.max(try.data.frame[,4]) + continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 + vector[maxi] <- 0 + list(summary=try.data.frame,next.vector=vector,continue=continue) + } > arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ + nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] + coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) + pval <- matrix(NA, nrow=nrc*2, ncol=nrc) + mylist <- rep(list(NULL), nrc) + names <- NULL + if(order[1] > 0) names <- paste('ar',1:order[1],sep='') + if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) + if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) + if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') + mylist[[1]] <- arima.out + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- FALSE + i <- 1 + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- 2 + aic <- arima.out$aic + while(!mystop){ + mylist[[i]] <- arima.out + arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) + aic <- c(aic, arima.out$aic) + last.arma <- armaGR(arima.out, names, length(series)) + mystop <- !last.arma$continue + coeff[i,] <- last.arma[[1]][,1] + pval [i,] <- last.arma[[1]][,4] + i <- i+1 + } + list(coeff, pval, mylist, aic=aic) + } > arimaSelectplot <- function(arimaSelect.out,noms,choix){ + noms <- names(arimaSelect.out[[3]][[1]]$coef) + coeff <- arimaSelect.out[[1]] + k <- min(which(is.na(coeff[,1])))-1 + coeff <- coeff[1:k,] + pval <- arimaSelect.out[[2]][1:k,] + aic <- arimaSelect.out$aic[1:k] + coeff[coeff==0] <- NA + n <- ncol(coeff) + if(missing(choix)) choix <- k + layout(matrix(c(1,1,1,2, + 3,3,3,2, + 3,3,3,4, + 5,6,7,7),nr=4), + widths=c(10,35,45,15), + heights=c(30,30,15,15)) + couleurs <- rainbow(75)[1:50]#(50) + ticks <- pretty(coeff) + par(mar=c(1,1,3,1)) + plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) + points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) + title('aic',line=2) + par(mar=c(3,0,0,0)) + plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) + rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), + xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), + ytop = rep(1,50), + ybottom= rep(0,50),col=couleurs,border=NA) + axis(1,ticks) + rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) + text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) + par(mar=c(1,1,3,1)) + image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) + for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { + if(pval[j,i]<.01) symb = 'green' + else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' + else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' + else symb = 'black' + polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), + c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), + col=symb) + if(j==choix) { + rect(xleft=i-.5, + xright=i+.5, + ybottom=k-j+1.5, + ytop=k-j+.5, + lwd=4) + text(i, + k-j+1, + round(coeff[j,i],2), + cex=1.2, + font=2) + } + else{ + rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) + text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) + } + } + axis(3,1:n,noms) + par(mar=c(0.5,0,0,0.5)) + plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) + cols <- c('green','orange','red','black') + niv <- c('0','0.01','0.05','0.1') + for(i in 0:3){ + polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), + c(.4 ,.7 , .4 , .4), + col=cols[i+1]) + text(2*i,0.5,niv[i+1],cex=1.5) + } + text(8,.5,1,cex=1.5) + text(4,0,'p-value',cex=2) + box() + residus <- arimaSelect.out[[3]][[choix]]$res + par(mar=c(1,2,4,1)) + acf(residus,main='') + title('acf',line=.5) + par(mar=c(1,2,4,1)) + pacf(residus,main='') + title('pacf',line=.5) + par(mar=c(2,2,4,1)) + qqnorm(residus,main='') + title('qq-norm',line=.5) + qqline(residus) + residus + } > if (par2 == 0) x <- log(x) > if (par2 != 0) x <- x^par2 > (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) [[1]] [,1] [,2] [,3] [,4] [,5] [,6] [1,] -0.1051811 -0.06942322 -0.2204539 -0.4444678 -0.7085050 0.2228617 [2,] 0.0000000 -0.02442367 -0.1931469 -0.5359996 -0.7483787 0.2200261 [3,] 0.0000000 0.00000000 -0.1900584 -0.5447585 -0.6943996 0.2217995 [4,] 0.0000000 0.00000000 -0.1864331 -0.5523858 0.0000000 0.1181815 [5,] 0.0000000 0.00000000 -0.1853340 -0.5553592 0.0000000 0.0000000 [6,] 0.0000000 0.00000000 -0.1824254 -0.5766202 0.0000000 0.0000000 [7,] 0.0000000 0.00000000 0.0000000 -0.6262731 0.0000000 0.0000000 [8,] NA NA NA NA NA NA [9,] NA NA NA NA NA NA [10,] NA NA NA NA NA NA [11,] NA NA NA NA NA NA [12,] NA NA NA NA NA NA [13,] NA NA NA NA NA NA [14,] NA NA NA NA NA NA [,7] [1,] 0.8862365 [2,] 0.9319158 [3,] 0.8714180 [4,] 0.1598283 [5,] 0.1461518 [6,] 0.0000000 [7,] 0.0000000 [8,] NA [9,] NA [10,] NA [11,] NA [12,] NA [13,] NA [14,] NA [[2]] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 0.69942 0.68506 0.08795 0.10435 0.38817 0.17115 0.35821 [2,] NA 0.84551 0.09160 0.00000 0.13689 0.13846 0.16767 [3,] NA NA 0.09525 0.00000 0.54003 0.22058 0.50123 [4,] NA NA 0.10114 0.00000 NA 0.38993 0.19665 [5,] NA NA 0.10186 0.00000 NA NA 0.20458 [6,] NA NA 0.10868 0.00000 NA NA NA [7,] NA NA NA 0.00000 NA NA NA [8,] NA NA NA NA NA NA NA [9,] NA NA NA NA NA NA NA [10,] NA NA NA NA NA NA NA [11,] NA NA NA NA NA NA NA [12,] NA NA NA NA NA NA NA [13,] NA NA NA NA NA NA NA [14,] NA NA NA NA NA NA NA [[3]] [[3]][[1]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 -0.1052 -0.0694 -0.2205 -0.4445 -0.7085 0.2229 0.8862 s.e. 0.2713 0.1705 0.1274 0.2702 0.8161 0.1612 0.9584 sigma^2 estimated as 459.2: log likelihood = -355.33, aic = 726.67 [[3]][[2]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 -0.1052 -0.0694 -0.2205 -0.4445 -0.7085 0.2229 0.8862 s.e. 0.2713 0.1705 0.1274 0.2702 0.8161 0.1612 0.9584 sigma^2 estimated as 459.2: log likelihood = -355.33, aic = 726.67 [[3]][[3]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 -0.0244 -0.1931 -0.5360 -0.7484 0.2200 0.9319 s.e. 0 0.1249 0.1130 0.1046 0.4976 0.1469 0.6687 sigma^2 estimated as 457.5: log likelihood = -355.41, aic = 724.83 [[3]][[4]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 -0.1901 -0.5448 -0.6944 0.2218 0.8714 s.e. 0 0 0.1125 0.0973 1.1280 0.1795 1.2893 sigma^2 estimated as 461.5: log likelihood = -355.43, aic = 722.86 [[3]][[5]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 -0.1864 -0.5524 0 0.1182 0.1598 s.e. 0 0 0.1123 0.0960 0 0.1367 0.1227 sigma^2 estimated as 468.3: log likelihood = -355.54, aic = 721.08 [[3]][[6]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 -0.1853 -0.5554 0 0 0.1462 s.e. 0 0 0.1119 0.0963 0 0 0.1142 sigma^2 estimated as 474.6: log likelihood = -355.91, aic = 719.82 [[3]][[7]] Call: arima(x = series, order = order, seasonal = seasonal, include.mean = include.mean, fixed = last.arma$next.vector, method = "ML") Coefficients: ar1 ar2 ar3 ma1 sar1 sar2 sma1 0 0 -0.1824 -0.5766 0 0 0 s.e. 0 0 0.1124 0.0928 0 0 0 sigma^2 estimated as 485.6: log likelihood = -356.71, aic = 719.42 $aic [1] 726.6685 724.8263 722.8640 721.0831 719.8212 719.4198 719.9284 Warning messages: 1: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 2: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 3: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 4: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 5: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE 6: In arima(series, order = order, seasonal = seasonal, include.mean = include.mean, : some AR parameters were fixed: setting transform.pars = FALSE > postscript(file="/var/fisher/rcomp/tmp/1952s1386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > resid <- arimaSelectplot(selection) > dev.off() null device 1 > resid Time Series: Start = 1 End = 80 Frequency = 1 [1] 0.03699997 -5.96231865 13.19975051 -4.38134105 -8.55664025 [6] 11.18585008 43.16008282 -18.05550981 -1.03390377 -21.48020777 [11] 12.95268837 92.74500871 -7.62959923 -36.37930719 6.34670392 [16] 5.44381425 11.20684768 -9.34880085 70.79839733 -21.43983458 [21] 19.35370166 -24.34078599 -47.89303894 -5.23120400 15.04473796 [26] 2.66174087 -18.54638021 24.23126851 -22.39261237 30.89218378 [31] 10.28581837 -17.63630370 -6.41302976 -14.06941248 -34.21393884 [36] 23.35942545 7.01011297 -10.15361143 -14.82805997 13.53771442 [41] 10.98186540 33.23113353 -13.64247376 35.04560129 2.68076272 [46] -6.20395765 -1.91546068 21.69972268 31.33007261 -6.02900024 [51] -20.55095760 -7.38401441 -22.45355576 -42.96053201 -26.58948432 [56] -29.88598874 -4.97592443 -14.23406923 -2.39675628 15.71921364 [61] -23.94266352 -4.34641981 -14.95227787 -5.27697234 1.41659440 [66] -13.91954398 -3.38446142 -4.40427258 -1.72869716 0.55047451 [71] -8.22986147 3.80177198 10.37460383 -6.47719721 -8.27547948 [76] -4.31240533 -1.49329926 -4.95561884 -0.03993522 -6.47575128 > postscript(file="/var/fisher/rcomp/tmp/2ufpo1386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > acf(resid,length(resid)/2, main='Residual Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/3fkpg1386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/4mmnb1386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > cpgram(resid, main='Residual Cumulative Periodogram') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/5aua71386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > hist(resid, main='Residual Histogram', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/6jtj61386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') > dev.off() null device 1 > postscript(file="/var/fisher/rcomp/tmp/7bge31386086514.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > qqnorm(resid, main='Residual Normal Q-Q Plot') > qqline(resid) > dev.off() null device 1 > ncols <- length(selection[[1]][1,]) > nrows <- length(selection[[2]][,1])-1 > > #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/fisher/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Iteration', header=TRUE) > for (i in 1:ncols) { + a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) + } > a<-table.row.end(a) > for (j in 1:nrows) { + a<-table.row.start(a) + mydum <- 'Estimates (' + mydum <- paste(mydum,j) + mydum <- paste(mydum,')') + a<-table.element(a,mydum, header=TRUE) + for (i in 1:ncols) { + a<-table.element(a,round(selection[[1]][j,i],4)) + } + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'(p-val)', header=TRUE) + for (i in 1:ncols) { + mydum <- '(' + mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') + mydum <- paste(mydum,')') + a<-table.element(a,mydum) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/85ek61386086514.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimated ARIMA Residuals', 1,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Value', 1,TRUE) > a<-table.row.end(a) > for (i in (par4*par5+par3):length(resid)) { + a<-table.row.start(a) + a<-table.element(a,resid[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/9gb9x1386086514.tab") > > try(system("convert tmp/1952s1386086514.ps tmp/1952s1386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/2ufpo1386086514.ps tmp/2ufpo1386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/3fkpg1386086514.ps tmp/3fkpg1386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/4mmnb1386086514.ps tmp/4mmnb1386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/5aua71386086514.ps tmp/5aua71386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/6jtj61386086514.ps tmp/6jtj61386086514.png",intern=TRUE)) character(0) > try(system("convert tmp/7bge31386086514.ps tmp/7bge31386086514.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 19.310 3.927 23.225