R version 3.0.2 (2013-09-25) -- "Frisbee Sailing"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(1
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+ ,0.00502
+ ,0.00004
+ ,0.00257
+ ,0.00312
+ ,1
+ ,112.239
+ ,126.609
+ ,104.095
+ ,0.00472
+ ,0.00004
+ ,0.00238
+ ,0.0029
+ ,1
+ ,116.15
+ ,131.731
+ ,109.815
+ ,0.00381
+ ,0.00003
+ ,0.00181
+ ,0.00232
+ ,1
+ ,170.368
+ ,268.796
+ ,79.543
+ ,0.00571
+ ,0.00003
+ ,0.00232
+ ,0.00269
+ ,1
+ ,208.083
+ ,253.792
+ ,91.802
+ ,0.00757
+ ,0.00004
+ ,0.00428
+ ,0.00428
+ ,1
+ ,198.458
+ ,219.29
+ ,148.691
+ ,0.00376
+ ,0.00002
+ ,0.00182
+ ,0.00215
+ ,1
+ ,202.805
+ ,231.508
+ ,86.232
+ ,0.0037
+ ,0.00002
+ ,0.00189
+ ,0.00211
+ ,1
+ ,202.544
+ ,241.35
+ ,164.168
+ ,0.00254
+ ,0.00001
+ ,0.001
+ ,0.00133
+ ,1
+ ,223.361
+ ,263.872
+ ,87.638
+ ,0.00352
+ ,0.00002
+ ,0.00169
+ ,0.00188
+ ,1
+ ,169.774
+ ,191.759
+ ,151.451
+ ,0.01568
+ ,0.00009
+ ,0.00863
+ ,0.00946
+ ,1
+ ,183.52
+ ,216.814
+ ,161.34
+ ,0.01466
+ ,0.00008
+ ,0.00849
+ ,0.00819
+ ,1
+ ,188.62
+ ,216.302
+ ,165.982
+ ,0.01719
+ ,0.00009
+ ,0.00996
+ ,0.01027
+ ,1
+ ,202.632
+ ,565.74
+ ,177.258
+ ,0.01627
+ ,0.00008
+ ,0.00919
+ ,0.00963
+ ,1
+ ,186.695
+ ,211.961
+ ,149.442
+ ,0.01872
+ ,0.0001
+ ,0.01075
+ ,0.01154
+ ,1
+ ,192.818
+ ,224.429
+ ,168.793
+ ,0.03107
+ ,0.00016
+ ,0.018
+ ,0.01958
+ ,1
+ ,198.116
+ ,233.099
+ ,174.478
+ ,0.02714
+ ,0.00014
+ ,0.01568
+ ,0.01699
+ ,1
+ ,121.345
+ ,139.644
+ ,98.25
+ ,0.00684
+ ,0.00006
+ ,0.00388
+ ,0.00332
+ ,1
+ ,119.1
+ ,128.442
+ ,88.833
+ ,0.00692
+ ,0.00006
+ ,0.00393
+ ,0.003
+ ,1
+ ,117.87
+ ,127.349
+ ,95.654
+ ,0.00647
+ ,0.00005
+ ,0.00356
+ ,0.003
+ ,1
+ ,122.336
+ ,142.369
+ ,94.794
+ ,0.00727
+ ,0.00006
+ ,0.00415
+ ,0.00339
+ ,1
+ ,117.963
+ ,134.209
+ ,100.757
+ ,0.01813
+ ,0.00015
+ ,0.01117
+ ,0.00718
+ ,1
+ ,126.144
+ ,154.284
+ ,97.543
+ ,0.00975
+ ,0.00008
+ ,0.00593
+ ,0.00454
+ ,1
+ ,127.93
+ ,138.752
+ ,112.173
+ ,0.00605
+ ,0.00005
+ ,0.00321
+ ,0.00318
+ ,1
+ ,114.238
+ ,124.393
+ ,77.022
+ ,0.00581
+ ,0.00005
+ ,0.00299
+ ,0.00316
+ ,1
+ ,115.322
+ ,135.738
+ ,107.802
+ ,0.00619
+ ,0.00005
+ ,0.00352
+ ,0.00329
+ ,1
+ ,114.554
+ ,126.778
+ ,91.121
+ ,0.00651
+ ,0.00006
+ ,0.00366
+ ,0.0034
+ ,1
+ ,112.15
+ ,131.669
+ ,97.527
+ ,0.00519
+ ,0.00005
+ ,0.00291
+ ,0.00284
+ ,1
+ ,102.273
+ ,142.83
+ ,85.902
+ ,0.00907
+ ,0.00009
+ ,0.00493
+ ,0.00461
+ ,0
+ ,236.2
+ ,244.663
+ ,102.137
+ ,0.00277
+ ,0.00001
+ ,0.00154
+ ,0.00153
+ ,0
+ ,237.323
+ ,243.709
+ ,229.256
+ ,0.00303
+ ,0.00001
+ ,0.00173
+ ,0.00159
+ ,0
+ ,260.105
+ ,264.919
+ ,237.303
+ ,0.00339
+ ,0.00001
+ ,0.00205
+ ,0.00186
+ ,0
+ ,197.569
+ ,217.627
+ ,90.794
+ ,0.00803
+ ,0.00004
+ ,0.0049
+ ,0.00448
+ ,0
+ ,240.301
+ ,245.135
+ ,219.783
+ ,0.00517
+ ,0.00002
+ ,0.00316
+ ,0.00283
+ ,0
+ ,244.99
+ ,272.21
+ ,239.17
+ ,0.00451
+ ,0.00002
+ ,0.00279
+ ,0.00237
+ ,0
+ ,112.547
+ ,133.374
+ ,105.715
+ ,0.00355
+ ,0.00003
+ ,0.00166
+ ,0.0019
+ ,0
+ ,110.739
+ ,113.597
+ ,100.139
+ ,0.00356
+ ,0.00003
+ ,0.0017
+ ,0.002
+ ,0
+ ,113.715
+ ,116.443
+ ,96.913
+ ,0.00349
+ ,0.00003
+ ,0.00171
+ ,0.00203
+ ,0
+ ,117.004
+ ,144.466
+ ,99.923
+ ,0.00353
+ ,0.00003
+ ,0.00176
+ ,0.00218
+ ,0
+ ,115.38
+ ,123.109
+ ,108.634
+ ,0.00332
+ ,0.00003
+ ,0.0016
+ ,0.00199
+ ,0
+ ,116.388
+ ,129.038
+ ,108.97
+ ,0.00346
+ ,0.00003
+ ,0.00169
+ ,0.00213
+ ,1
+ ,151.737
+ ,190.204
+ ,129.859
+ ,0.00314
+ ,0.00002
+ ,0.00135
+ ,0.00162
+ ,1
+ ,148.79
+ ,158.359
+ ,138.99
+ ,0.00309
+ ,0.00002
+ ,0.00152
+ ,0.00186
+ ,1
+ ,148.143
+ ,155.982
+ ,135.041
+ ,0.00392
+ ,0.00003
+ ,0.00204
+ ,0.00231
+ ,1
+ ,150.44
+ ,163.441
+ ,144.736
+ ,0.00396
+ ,0.00003
+ ,0.00206
+ ,0.00233
+ ,1
+ ,148.462
+ ,161.078
+ ,141.998
+ ,0.00397
+ ,0.00003
+ ,0.00202
+ ,0.00235
+ ,1
+ ,149.818
+ ,163.417
+ ,144.786
+ ,0.00336
+ ,0.00002
+ ,0.00174
+ ,0.00198
+ ,0
+ ,117.226
+ ,123.925
+ ,106.656
+ ,0.00417
+ ,0.00004
+ ,0.00186
+ ,0.0027
+ ,0
+ ,116.848
+ ,217.552
+ ,99.503
+ ,0.00531
+ ,0.00005
+ ,0.0026
+ ,0.00346
+ ,0
+ ,116.286
+ ,177.291
+ ,96.983
+ ,0.00314
+ ,0.00003
+ ,0.00134
+ ,0.00192
+ ,0
+ ,116.556
+ ,592.03
+ ,86.228
+ ,0.00496
+ ,0.00004
+ ,0.00254
+ ,0.00263
+ ,0
+ ,116.342
+ ,581.289
+ ,94.246
+ ,0.00267
+ ,0.00002
+ ,0.00115
+ ,0.00148
+ ,0
+ ,114.563
+ ,119.167
+ ,86.647
+ ,0.00327
+ ,0.00003
+ ,0.00146
+ ,0.00184
+ ,0
+ ,201.774
+ ,262.707
+ ,78.228
+ ,0.00694
+ ,0.00003
+ ,0.00412
+ ,0.00396
+ ,0
+ ,174.188
+ ,230.978
+ ,94.261
+ ,0.00459
+ ,0.00003
+ ,0.00263
+ ,0.00259
+ ,0
+ ,209.516
+ ,253.017
+ ,89.488
+ ,0.00564
+ ,0.00003
+ ,0.00331
+ ,0.00292
+ ,0
+ ,174.688
+ ,240.005
+ ,74.287
+ ,0.0136
+ ,0.00008
+ ,0.00624
+ ,0.00564
+ ,0
+ ,198.764
+ ,396.961
+ ,74.904
+ ,0.0074
+ ,0.00004
+ ,0.0037
+ ,0.0039
+ ,0
+ ,214.289
+ ,260.277
+ ,77.973
+ ,0.00567
+ ,0.00003
+ ,0.00295
+ ,0.00317)
+ ,dim=c(8
+ ,195)
+ ,dimnames=list(c('status'
+ ,'MDVP:Fo(Hz)'
+ ,'MDVP:Fhi(Hz)'
+ ,'MDVP:Flo(Hz)'
+ ,'MDVP:Jitter(%)'
+ ,'MDVP:Jitter(Abs)'
+ ,'MDVP:RAP'
+ ,'MDVP:PPQ')
+ ,1:195))
>  y <- array(NA,dim=c(8,195),dimnames=list(c('status','MDVP:Fo(Hz)','MDVP:Fhi(Hz)','MDVP:Flo(Hz)','MDVP:Jitter(%)','MDVP:Jitter(Abs)','MDVP:RAP','MDVP:PPQ'),1:195))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par1 = 'pearson'
> main = 'Pearson Correlation Matrix'
> par1 <- 'pearson'
> #'GNU S' R Code compiled by R2WASP v. 1.2.327 ()
> #Author: root
> #To cite this work: Patrick Wessa, (2013), Multivariate Correlation Matrix (v1.0.7) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Patrick.Wessa/rwasp_pairs.wasp/
> #Source of accompanying publication: 
> #
> panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(0, 1, 0, 1))
+ rr <- cor.test(x, y, method=par1)
+ r <- round(rr$p.value,2)
+ txt <- format(c(r, 0.123456789), digits=digits)[1]
+ txt <- paste(prefix, txt, sep='')
+ if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
+ text(0.5, 0.5, txt, cex = cex)
+ }
> panel.hist <- function(x, ...)
+ {
+ usr <- par('usr'); on.exit(par(usr))
+ par(usr = c(usr[1:2], 0, 1.5) )
+ h <- hist(x, plot = FALSE)
+ breaks <- h$breaks; nB <- length(breaks)
+ y <- h$counts; y <- y/max(y)
+ rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1rlm31386678044.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> n <- length(y[,1])
> n
[1] 8
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,' ',header=TRUE)
> for (i in 1:n) {
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ }
> a<-table.row.end(a)
> for (i in 1:n) {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
+ for (j in 1:n) {
+ r <- cor.test(y[i,],y[j,],method=par1)
+ a<-table.element(a,round(r$estimate,3))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/22pk21386678044.tab") 
> ncorrs <- (n*n -n)/2
> mycorrs <- array(0, dim=c(10,3))
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'pair',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> cor.test(y[1,],y[2,],method=par1)

	Pearson's product-moment correlation

data:  y[1, ] and y[2, ]
t = -5.7695, df = 193, p-value = 3.122e-08
alternative hypothesis: true correlation is not equal to 0
95 percent confidence interval:
 -0.4972500 -0.2568656
sample estimates:
       cor 
-0.3835352 

> for (i in 1:(n-1))
+ {
+ for (j in (i+1):n)
+ {
+ a<-table.row.start(a)
+ dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
+ a<-table.element(a,dum,header=TRUE)
+ rp <- cor.test(y[i,],y[j,],method='pearson')
+ a<-table.element(a,round(rp$estimate,4))
+ rs <- cor.test(y[i,],y[j,],method='spearman')
+ a<-table.element(a,round(rs$estimate,4))
+ rk <- cor.test(y[i,],y[j,],method='kendall')
+ a<-table.element(a,round(rk$estimate,4))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'p-value',header=T)
+ a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
+ a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
+ a<-table.row.end(a)
+ for (iii in 1:10) {
+ iiid100 <- iii / 100
+ if (rp$p.value < iiid100) mycorrs[iii, 1] = mycorrs[iii, 1] + 1
+ if (rs$p.value < iiid100) mycorrs[iii, 2] = mycorrs[iii, 2] + 1
+ if (rk$p.value < iiid100) mycorrs[iii, 3] = mycorrs[iii, 3] + 1
+ }
+ }
+ }
There were 25 warnings (use warnings() to see them)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3ebw31386678044.tab") 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Meta Analysis of Correlation Tests',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Number of significant by total number of Correlations',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Type I error',1,TRUE)
> a<-table.element(a,'Pearson r',1,TRUE)
> a<-table.element(a,'Spearman rho',1,TRUE)
> a<-table.element(a,'Kendall tau',1,TRUE)
> a<-table.row.end(a)
> for (iii in 1:10) {
+ iiid100 <- iii / 100
+ a<-table.row.start(a)
+ a<-table.element(a,round(iiid100,2),header=T)
+ a<-table.element(a,round(mycorrs[iii,1]/ncorrs,2))
+ a<-table.element(a,round(mycorrs[iii,2]/ncorrs,2))
+ a<-table.element(a,round(mycorrs[iii,3]/ncorrs,2))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/4vp7m1386678045.tab") 
> 
> try(system("convert tmp/1rlm31386678044.ps tmp/1rlm31386678044.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  7.611   2.118   9.689