R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i686-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(1.01,1.02,1.04,1.06,1.06,1.06,1.06,1.06,1.02,0.98,0.99,0.99,0.94,0.96,0.98,1.01,1.01,1.02,1.04,1.03,1.05,1.08,1.17,1.11,1.11,1.11,1.2,1.21,1.31,1.37,1.37,1.26,1.23,1.17,1.06,0.95,0.92,0.92,0.9,0.93,0.93,0.97,0.96,0.99,0.98,0.96,1,0.99,1.03,1.02,1.07,1.13,1.15,1.16,1.14,1.15,1.15,1.16,1.17,1.22,1.26,1.29,1.36,1.38,1.37,1.37,1.37,1.36,1.38,1.4,1.44,1.42) > par3 = '0' > par2 = '5' > par1 = '200' > par3 <- '0' > par2 <- '5' > par1 <- '50' > par1 <- as.numeric(par1) > par2 <- as.numeric(par2) > if (par3 == '0') bw <- NULL > if (par3 != '0') bw <- as.numeric(par3) > if (par1 < 10) par1 = 10 > if (par1 > 5000) par1 = 5000 > library(modeest) This is package 'modeest' written by Paul PONCET. For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'. > library(lattice) > library(boot) Attaching package: 'boot' The following object(s) are masked from 'package:lattice': melanoma > boot.stat <- function(s,i) + { + s.mean <- mean(s[i]) + s.median <- median(s[i]) + s.midrange <- (max(s[i]) + min(s[i])) / 2 + s.mode <- mlv(s[i], method='mfv')$M + s.kernelmode <- mlv(s[i], method='kernel', bw=bw)$M + c(s.mean, s.median, s.midrange, s.mode, s.kernelmode) + } > (r <- boot(x,boot.stat, R=par1, stype='i')) ORDINARY NONPARAMETRIC BOOTSTRAP Call: boot(data = x, statistic = boot.stat, R = par1, stype = "i") Bootstrap Statistics : original bias std. error t1* 1.118056 -0.002013889 0.01647562 t2* 1.060000 0.010700000 0.02725559 t3* 1.170000 -0.002500000 0.01050996 t4* 1.060000 0.039616667 0.11633739 t5* 1.012695 0.006062091 0.03029403 Warning messages: 1: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 2: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 3: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 4: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 5: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 6: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal 7: In .deal.ties(ny, i, tie.action, tie.limit) : encountered a tie, and the difference between minimal and maximal value is > length('x') * 'tie.limit' the distribution could be multimodal > postscript(file="/var/wessaorg/rcomp/tmp/1fidy1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2gpdt1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/33u2g1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4p35u1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5anb91358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6hivw1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/7zqou1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/8kwna1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/9ix7r1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,4],col='black',main='Density Plot',xlab='mode') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/108wa11358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,5],col='black',main='Density Plot',xlab='mode of kernel dens.') > dev.off() null device 1 > z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5])) > colnames(z) <- list('mean','median','midrange','mode','mode k.dens') > postscript(file="/var/wessaorg/rcomp/tmp/11428i1358300720.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency') Warning message: In bxp(list(stats = c(1.07736111111111, 1.10736111111111, 1.1175, : some notches went outside hinges ('box'): maybe set notch=FALSE > grid() > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimation Results of Bootstrap',6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'statistic',header=TRUE) > a<-table.element(a,'Q1',header=TRUE) > a<-table.element(a,'Estimate',header=TRUE) > a<-table.element(a,'Q3',header=TRUE) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,'IQR',header=TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mean',header=TRUE) > q1 <- quantile(r$t[,1],0.25)[[1]] > q3 <- quantile(r$t[,1],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[1],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element( a,signif( sqrt(var(r$t[,1])),par2 ) ) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'median',header=TRUE) > q1 <- quantile(r$t[,2],0.25)[[1]] > q3 <- quantile(r$t[,2],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[2],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,2])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'midrange',header=TRUE) > q1 <- quantile(r$t[,3],0.25)[[1]] > q3 <- quantile(r$t[,3],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[3],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,3])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode',header=TRUE) > q1 <- quantile(r$t[,4],0.25)[[1]] > q3 <- quantile(r$t[,4],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[4],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,4])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode k.dens',header=TRUE) > q1 <- quantile(r$t[,5],0.25)[[1]] > q3 <- quantile(r$t[,5],0.75)[[1]] > a<-table.element(a,signif(q1,par2)) > a<-table.element(a,signif(r$t0[5],par2)) > a<-table.element(a,signif(q3,par2)) > a<-table.element(a,signif(sqrt(var(r$t[,5])),par2)) > a<-table.element(a,signif(q3-q1,par2)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/124m4y1358300720.tab") > > try(system("convert tmp/1fidy1358300720.ps tmp/1fidy1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/2gpdt1358300720.ps tmp/2gpdt1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/33u2g1358300720.ps tmp/33u2g1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/4p35u1358300720.ps tmp/4p35u1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/5anb91358300720.ps tmp/5anb91358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/6hivw1358300720.ps tmp/6hivw1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/7zqou1358300720.ps tmp/7zqou1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/8kwna1358300720.ps tmp/8kwna1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/9ix7r1358300720.ps tmp/9ix7r1358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/108wa11358300720.ps tmp/108wa11358300720.png",intern=TRUE)) character(0) > try(system("convert tmp/11428i1358300720.ps tmp/11428i1358300720.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 7.229 1.002 8.265