R version 2.15.2 (2012-10-26) -- "Trick or Treat"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> x <- array(list(1
+ ,7
+ ,0
+ ,109
+ ,13.1
+ ,68
+ ,32
+ ,258
+ ,183
+ ,137
+ ,95
+ ,2
+ ,7
+ ,1
+ ,112
+ ,12.9
+ ,65
+ ,19
+ ,449
+ ,245
+ ,134
+ ,85
+ ,3
+ ,8
+ ,0
+ ,124
+ ,14.1
+ ,64
+ ,22
+ ,441
+ ,268
+ ,147
+ ,100
+ ,4
+ ,8
+ ,1
+ ,125
+ ,16.2
+ ,67
+ ,41
+ ,234
+ ,146
+ ,124
+ ,85
+ ,5
+ ,8
+ ,0
+ ,127
+ ,21.5
+ ,93
+ ,52
+ ,202
+ ,131
+ ,104
+ ,95
+ ,6
+ ,9
+ ,0
+ ,130
+ ,17.5
+ ,68
+ ,44
+ ,308
+ ,155
+ ,118
+ ,80
+ ,7
+ ,11
+ ,1
+ ,139
+ ,30.7
+ ,89
+ ,28
+ ,305
+ ,179
+ ,119
+ ,65
+ ,8
+ ,12
+ ,1
+ ,150
+ ,28.4
+ ,69
+ ,18
+ ,369
+ ,198
+ ,103
+ ,110
+ ,9
+ ,12
+ ,0
+ ,146
+ ,25.1
+ ,67
+ ,24
+ ,312
+ ,194
+ ,128
+ ,70
+ ,10
+ ,13
+ ,1
+ ,155
+ ,31.5
+ ,68
+ ,23
+ ,413
+ ,225
+ ,136
+ ,95
+ ,11
+ ,13
+ ,0
+ ,156
+ ,39.9
+ ,89
+ ,39
+ ,206
+ ,142
+ ,95
+ ,110
+ ,12
+ ,14
+ ,1
+ ,153
+ ,42.1
+ ,90
+ ,26
+ ,253
+ ,191
+ ,121
+ ,90
+ ,13
+ ,14
+ ,0
+ ,160
+ ,45.6
+ ,93
+ ,45
+ ,174
+ ,139
+ ,108
+ ,100
+ ,14
+ ,15
+ ,1
+ ,158
+ ,51.2
+ ,93
+ ,45
+ ,158
+ ,124
+ ,90
+ ,80
+ ,15
+ ,16
+ ,1
+ ,160
+ ,35.9
+ ,66
+ ,31
+ ,302
+ ,133
+ ,101
+ ,134
+ ,16
+ ,17
+ ,1
+ ,153
+ ,34.8
+ ,70
+ ,29
+ ,204
+ ,118
+ ,120
+ ,134
+ ,17
+ ,17
+ ,0
+ ,174
+ ,44.7
+ ,70
+ ,49
+ ,187
+ ,104
+ ,103
+ ,165
+ ,18
+ ,17
+ ,1
+ ,176
+ ,60.1
+ ,92
+ ,29
+ ,188
+ ,129
+ ,130
+ ,120
+ ,19
+ ,17
+ ,0
+ ,171
+ ,42.6
+ ,69
+ ,38
+ ,172
+ ,130
+ ,103
+ ,130
+ ,20
+ ,19
+ ,1
+ ,156
+ ,37.2
+ ,72
+ ,21
+ ,216
+ ,119
+ ,81
+ ,85
+ ,21
+ ,19
+ ,0
+ ,174
+ ,54.6
+ ,86
+ ,37
+ ,184
+ ,118
+ ,101
+ ,85
+ ,22
+ ,20
+ ,0
+ ,178
+ ,64
+ ,86
+ ,34
+ ,225
+ ,148
+ ,135
+ ,160
+ ,23
+ ,23
+ ,0
+ ,180
+ ,73.8
+ ,97
+ ,57
+ ,171
+ ,108
+ ,98
+ ,165
+ ,24
+ ,23
+ ,0
+ ,175
+ ,51.1
+ ,71
+ ,33
+ ,224
+ ,131
+ ,113
+ ,95
+ ,25
+ ,23
+ ,0
+ ,179
+ ,71.5
+ ,95
+ ,52
+ ,225
+ ,127
+ ,101
+ ,195)
+ ,dim=c(11
+ ,25)
+ ,dimnames=list(c('ID'
+ ,'Age'
+ ,'Sex'
+ ,'Height'
+ ,'Weight'
+ ,'BMP'
+ ,'FEV1'
+ ,'RV'
+ ,'FRC'
+ ,'TLC'
+ ,'Premax')
+ ,1:25))
>  y <- array(NA,dim=c(11,25),dimnames=list(c('ID','Age','Sex','Height','Weight','BMP','FEV1','RV','FRC','TLC','Premax'),1:25))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'TRUE'
> par1 = '3'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE DATA'
> par3 <- '0'
> par2 <- 'TRUE'
> par1 <- '3'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1pqc61362155132.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2yie11362155132.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11]
[1,]    1    7    0  109 12.9   64   18  158  104    81    65
[2,]    7   11    0  139 25.1   68   26  188  127   101    85
[3,]   13   14    0  156 37.2   71   33  225  139   113    95
[4,]   19   17    1  174 51.1   90   44  305  183   128   130
[5,]   25   23    1  180 73.8   97   57  449  245   147   195

$n
 [1] 25 25 25 25 25 25 25 25 25 25 25

$conf
       [,1]   [,2]   [,3]   [,4]   [,5]   [,6]   [,7]    [,8]    [,9]   [,10]
[1,]  9.208 12.104 -0.316 144.94 28.984 64.048 27.312 188.028 121.304 104.468
[2,] 16.792 15.896  0.316 167.06 45.416 77.952 38.688 261.972 156.696 121.532
      [,11]
[1,]  80.78
[2,] 109.22

$out
[1] 268

$group
[1] 9

$names
 [1] "ID"     "Age"    "Sex"    "Height" "Weight" "BMP"    "FEV1"   "RV"    
 [9] "FRC"    "TLC"    "Premax"

Warning message:
In bxp(list(stats = c(1, 7, 13, 19, 25, 7, 11, 14, 17, 23, 0, 0,  :
  some notches went outside hinges ('box'): maybe set notch=FALSE
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,signif(r$stats[j,i], digits=4))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/37hm71362155132.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(r$conf[1,i], digits=4))
+ a<-table.element(a, signif(r$stats[3,i], digits=4))
+ a<-table.element(a,signif(r$conf[2,i], digits=4))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/490gm1362155132.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4))
+ a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4))
+ a<-table.row.end(a)
+ }
There were 22 warnings (use warnings() to see them)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/5dwa81362155132.tab") 
> 
> try(system("convert tmp/1pqc61362155132.ps tmp/1pqc61362155132.png",intern=TRUE))
character(0)
> try(system("convert tmp/2yie11362155132.ps tmp/2yie11362155132.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.916   0.231   2.120