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Type 'q()' to quit R. > x <- array(list(9,9,7,8,10,9,10,7,8,9,9,7,9,9,8,5,9,5,8,7,9,8,9,7,9,8,7,6,10,10,7,7,10,10,10,9,9,10,10,9,10,9,7,7,9,9,6,10,9,10,8,9,10,10,4,6,10,10,10,10,9,10,10,8,10,8,10,9,10,10,10,9,7,9,5,7,10,9,8,8,9,7,11,5,9,9,6,6,7,7,7,7,10,9,11,11,10,9,9,5,9,8,8,9,10,9,10,10,10,10,9,9,9,8,6,3,10,8,7,9),dim=c(4,30),dimnames=list(c('FRU','FUD','NFRU','NFUD '),1:30)) > y <- array(NA,dim=c(4,30),dimnames=list(c('FRU','FUD','NFRU','NFUD '),1:30)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = 'Frequency' > xlab = 'Inversion score' > main = 'Inversion effect' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: aston2 > #To cite this work: Ian E. Holliday, 2012, CARE Boxplots and Scatterplot Matrix (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Ian.Holliday/rwasp_CARE%20Data%20Boxplot.wasp/ > #Source of accompanying publication: > # > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/wessaorg/rcomp/tmp/1axks1362959932.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) Warning messages: 1: In strwidth(labels, "user") : font width unknown for character 0xd 2: In text.default(x, y, txt, cex = cex, font = font) : font width unknown for character 0xd 3: In text.default(x, y, txt, cex = cex, font = font) : font metrics unknown for character 0xd > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/wessaorg/rcomp/tmp/2soiz1362959932.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [,3] [,4] [1,] 8 5 4 5.0 [2,] 9 8 7 7.0 [3,] 9 9 8 7.5 [4,] 10 10 10 9.0 [5,] 10 10 11 11.0 $n [1] 30 30 30 30 $conf [,1] [,2] [,3] [,4] [1,] 8.711533 8.423066 7.134598 6.923066 [2,] 9.288467 9.576934 8.865402 8.076934 $out [1] 7 7 3 $group [1] 1 1 4 $names [1] "FRU" "FUD" "NFRU" "NFUD\r" Warning messages: 1: In bxp(list(stats = c(8, 9, 9, 10, 10, 5, 8, 9, 10, 10, 4, 7, 8, : some notches went outside hinges ('box'): maybe set notch=FALSE 2: In axis(side = 1, at = 1:4, labels = c("FRU", "FUD", "NFRU", "NFUD\r" : font width unknown for character 0xd 3: In axis(side = 1, at = 1:4, labels = c("FRU", "FUD", "NFRU", "NFUD\r" : font width unknown for character 0xd > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3tssz1362959932.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/47pjk1362959932.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } Warning messages: 1: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 2: sd() is deprecated. Use sapply(*, sd) instead. 3: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 4: sd() is deprecated. Use sapply(*, sd) instead. 5: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 6: sd() is deprecated. Use sapply(*, sd) instead. 7: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 8: sd() is deprecated. Use sapply(*, sd) instead. > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/5onyb1362959932.tab") > > try(system("convert tmp/1axks1362959932.ps tmp/1axks1362959932.png",intern=TRUE)) character(0) > try(system("convert tmp/2soiz1362959932.ps tmp/2soiz1362959932.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.227 0.203 1.459