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Type 'q()' to quit R. > x <- array(list(35,-2.67,44,9.67,20,-6,38,28.33,43,12,32,-11.3,24,3,59,-4.67,41,-5,44,2.33,66,37.67,40,7.5,24,5,60,30,35,15.33),dim=c(2,15),dimnames=list(c('BPVT','RAD '),1:15)) > y <- array(NA,dim=c(2,15),dimnames=list(c('BPVT','RAD '),1:15)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par3 = '0' > par2 = 'TRUE' > par1 = '3' > ylab = 'Test Scores' > xlab = 'tests' > main = 'females' > par3 <- '0' > par2 <- 'TRUE' > par1 <- '3' > par1 <- as.numeric(par1) #colour > par2<- as.logical(par2) # Notches ? > par3<-as.numeric(par3) # % trim > if(par3>45){par3<-45;warning('trim limited to 45%')} > if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')} > lotrm<-as.integer(length(y[1,])*par3/100)+1 > hitrm<-as.integer(length(y[1,])*(100-par3)/100) > y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) )) > for(i in 1:dim(y)[1]){ + tmp<-order(y[i,]) + y1[i,]<- y[i, tmp[lotrm:hitrm] ] + } > postscript(file="/var/fisher/rcomp/tmp/1r0d71369234472.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > pairs(t(y)) Warning messages: 1: In strwidth(labels, "user") : font width unknown for character 0xd 2: In text.default(x, y, txt, cex = cex, font = font) : font width unknown for character 0xd 3: In text.default(x, y, txt, cex = cex, font = font) : font metrics unknown for character 0xd > dev.off() null device 1 > y<-y1 > z <- as.data.frame(t(y)) > postscript(file="/var/fisher/rcomp/tmp/2w22y1369234472.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1)) $stats [,1] [,2] [1,] 20.0 -11.300 [2,] 33.5 -3.670 [3,] 40.0 5.000 [4,] 44.0 13.665 [5,] 59.0 37.670 $n [1] 15 15 $conf [,1] [,2] [1,] 35.71648 -2.071887 [2,] 44.28352 12.071887 $out [1] 60 66 $group [1] 1 1 $names [1] "BPVT" "RAD\r" Warning messages: 1: In bxp(list(stats = c(20, 33.5, 40, 44, 59, -11.3, -3.67, 5, 13.665, : some notches went outside hinges ('box'): maybe set notch=FALSE 2: In axis(side = 1, at = 1:2, labels = c("BPVT", "RAD\r")) : font width unknown for character 0xd 3: In axis(side = 1, at = 1:2, labels = c("BPVT", "RAD\r")) : font width unknown for character 0xd > dev.off() null device 1 > > #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/fisher/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + for (j in 1:5) + { + a<-table.element(a,signif(r$stats[j,i], digits=4)) + } + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/30v1j1369234472.tab") > if (par2){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Boxplot Notches',4,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Variable',1,TRUE) + a<-table.element(a,'lower bound',1,TRUE) + a<-table.element(a,'median',1,TRUE) + a<-table.element(a,'upper bound',1,TRUE) + a<-table.row.end(a) + for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(r$conf[1,i], digits=4)) + a<-table.element(a, signif(r$stats[3,i], digits=4)) + a<-table.element(a,signif(r$conf[2,i], digits=4)) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/fisher/rcomp/tmp/4l0uz1369234472.tab") + } > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Boxplot Means',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Variable',1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE) > a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE) > a<-table.row.end(a) > for (i in 1:length(y[,1])) + { + a<-table.row.start(a) + a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE) + a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4)) + a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4)) + a<-table.row.end(a) + } Warning messages: 1: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 2: sd() is deprecated. Use sapply(*, sd) instead. 3: mean() is deprecated. Use colMeans() or sapply(*, mean) instead. 4: sd() is deprecated. Use sapply(*, sd) instead. > a<-table.end(a) > table.save(a,file="/var/fisher/rcomp/tmp/5lhao1369234472.tab") > > try(system("convert tmp/1r0d71369234472.ps tmp/1r0d71369234472.png",intern=TRUE)) character(0) > try(system("convert tmp/2w22y1369234472.ps tmp/2w22y1369234472.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.385 0.332 1.694