R version 2.15.3 (2013-03-01) -- "Security Blanket"
Copyright (C) 2013 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

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> x <- array(list(-2.67,-6.5,9.67,-7.33,-6,49.33,28.33,-11,12,-8.33,-11.3,9,3,2.33,-4.67,-12.3,-5,5.67,2.33,-2,37.67,1.33,7.5,-13,5,-5.67,30,-4,15.33,2),dim=c(2,15),dimnames=list(c('Males','Females'),1:15))
>  y <- array(NA,dim=c(2,15),dimnames=list(c('Males','Females'),1:15))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'FALSE'
> par1 = '3'
> ylab = 'RAD scores'
> xlab = 'Gender'
> main = 'RAD scores of female and males'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1b3te1369235604.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2e79l1369235604.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
        [,1]    [,2]
[1,] -11.300 -13.000
[2,]  -3.670  -7.830
[3,]   5.000  -4.000
[4,]  13.665   2.165
[5,]  37.670   9.000

$n
[1] 15 15

$conf
          [,1]        [,2]
[1,] -2.071887 -8.07750269
[2,] 12.071887  0.07750269

$out
[1] 49.33

$group
[1] 2

$names
[1] "Males"   "Females"

> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,signif(r$stats[j,i], digits=4))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/35f4j1369235604.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(r$conf[1,i], digits=4))
+ a<-table.element(a, signif(r$stats[3,i], digits=4))
+ a<-table.element(a,signif(r$conf[2,i], digits=4))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4irmm1369235604.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4))
+ a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4))
+ a<-table.row.end(a)
+ }
Warning messages:
1: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
2: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
3: mean(<data.frame>) is deprecated.
 Use colMeans() or sapply(*, mean) instead. 
4: sd(<data.frame>) is deprecated.
 Use sapply(*, sd) instead. 
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/5de1b1369235604.tab") 
> 
> try(system("convert tmp/1b3te1369235604.ps tmp/1b3te1369235604.png",intern=TRUE))
character(0)
> try(system("convert tmp/2e79l1369235604.ps tmp/2e79l1369235604.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.499   0.342   1.812