R version 3.0.2 (2013-09-25) -- "Frisbee Sailing"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: i686-pc-linux-gnu (32-bit)

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> x <- array(list(89,95,90,87,82,91,82,84,71,92,80,84,62,84,77,69,80,84,87,84,96,85,80,89,85,83,89,86,89,91,73,90,88,77,86,88,83,88,91,88,98,102,80,103,84,84,90,87,92,88,86,93,117,101,88,88,86,113,78,95,104,99,89,85,99,105,84,105,89,96,95,88,58,93,77,93,77,69,98,83,58,83,81,93,92,69,94,86,87,90,75,87,80,92,84,75,87,89,114,88,97,87,102,113,80,102,112,101,104,87,75,105,82,101,92,79,102,86,73,95,78,104,74,79,92,86,97,81,92,92,91,95,102,97,89,87,98,94,117,105,92,94,70,88,63,105,91,113,106,69,81,69,98,100,88,113,95,88,105,104,90,94,58,91,86,103,112,95,71,69,98,86,87,108,98,83,117,102,98,94,98,113,90,113,84,93,86,105,68,88,86,90,77,92,83,81,90,86,107,85,102,86,90,97,113,103,86,102),dim=c(2,104),dimnames=list(c('WJ7RD','WJ10RD'),1:104))
>  y <- array(NA,dim=c(2,104),dimnames=list(c('WJ7RD','WJ10RD'),1:104))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '5'
> par2 = 'TRUE'
> par1 = '2'
> ylab = 'Test Scores'
> xlab = 'CARE Variable Names'
> main = 'CARE data Reading y7 vs y10'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1q8py1382201864.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2lhrz1382201864.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
     [,1] [,2]
[1,]   68   75
[2,]   82   86
[3,]   88   90
[4,]   95   96
[5,]  112  108

$n
[1] 93 93

$conf
        [,1]     [,2]
[1,] 85.8701 88.36162
[2,] 90.1299 91.63838

$out
[1] 69

$group
[1] 2

$names
[1] "WJ7RD"  "WJ10RD"

> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,round(r$stats[j,i], digits=2))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3swxz1382201864.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(r$conf[1,i], digits=2))
+ a<-table.element(a, round(r$stats[3,i], digits=2))
+ a<-table.element(a,round(r$conf[2,i], digits=2))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4rjl31382201864.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,round(mean(unlist(z[i]), trim=par3/100, na.rm=TRUE), digits=2))
+ a<-table.element(a,round(sd(unlist(z[i]), na.rm=TRUE), digits=2))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/52gej1382201864.tab") 
> 
> try(system("convert tmp/1q8py1382201864.ps tmp/1q8py1382201864.png",intern=TRUE))
character(0)
> try(system("convert tmp/2lhrz1382201864.ps tmp/2lhrz1382201864.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.771   0.381   2.119