R version 3.0.2 (2013-09-25) -- "Frisbee Sailing"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: i686-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> x <- array(list(0.82
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+ ,dim=c(12
+ ,90)
+ ,dimnames=list(c('V1'
+ ,'V2'
+ ,'V3'
+ ,'V4'
+ ,'V5'
+ ,'V6'
+ ,'V7'
+ ,'V8'
+ ,'V9'
+ ,'V10'
+ ,'V11'
+ ,'V12')
+ ,1:90))
>  y <- array(NA,dim=c(12,90),dimnames=list(c('V1','V2','V3','V4','V5','V6','V7','V8','V9','V10','V11','V12'),1:90))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = '5'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'essays'
> main = 'Dendrogram'
> par4 <- 'FALSE'
> par3 <- 'FALSE'
> par2 <- '5'
> par1 <- 'ward'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: root
> #To cite this work: Wessa, P., (2012), Hierarchical Clustering (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 90 members at h = 2842]
  |--[dendrogram w/ 2 branches and 45 members at h = 585]
  |  |--[dendrogram w/ 2 branches and 21 members at h = 123]
  |  |  |--[dendrogram w/ 2 branches and 7 members at h = 11.9]
  |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 1.01]
  |  |  |  |  |--leaf "74" 
  |  |  |  |  `--leaf "85" 
  |  |  |  `--[dendrogram w/ 2 branches and 5 members at h = 5.76]
  |  |  |     |--leaf "62" 
  |  |  |     `--[dendrogram w/ 2 branches and 4 members at h = 1.64]
  |  |  |        |--leaf "63" 
  |  |  |        `--[dendrogram w/ 2 branches and 3 members at h = 1.25]
  |  |  |           |--leaf "47" 
  |  |  |           `--[dendrogram w/ 2 branches and 2 members at h = 0.363]
  |  |  |              |--leaf "5" 
  |  |  |              `--leaf "90" 
  |  |  `--[dendrogram w/ 2 branches and 14 members at h = 44.4]
  |  |     |--[dendrogram w/ 2 branches and 5 members at h = 3.24]
  |  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 1.01]
  |  |     |  |  |--leaf "9" 
  |  |     |  |  `--leaf "38" 
  |  |     |  `--[dendrogram w/ 2 branches and 3 members at h = 1.3]
  |  |     |     |--leaf "4" 
  |  |     |     `--[dendrogram w/ 2 branches and 2 members at h = 0.127]
  |  |     |        |--leaf "42" 
  |  |     |        `--leaf "52" 
  |  |     `--[dendrogram w/ 2 branches and 9 members at h = 15]
  |  |        |--[dendrogram w/ 2 branches and 3 members at h = 4.33]
  |  |        |  |--leaf "53" 
  |  |        |  `--[dendrogram w/ 2 branches and 2 members at h = 1.04]
  |  |        |     |--leaf "71" 
  |  |        |     `--leaf "72" 
  |  |        `--[dendrogram w/ 2 branches and 6 members at h = 7.85]
  |  |           |--[dendrogram w/ 2 branches and 3 members at h = 1.32]
  |  |           |  |--leaf "36" 
  |  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 0.217]
  |  |           |     |--leaf "3" 
  |  |           |     `--leaf "77" 
  |  |           `--[dendrogram w/ 2 branches and 3 members at h = 2.6]
  |  |              |--leaf "8" 
  |  |              `--[dendrogram w/ 2 branches and 2 members at h = 0.209]
  |  |                 |--leaf "6" 
  |  |                 `--leaf "51" 
  |  `--[dendrogram w/ 2 branches and 24 members at h = 126]
  |     |--[dendrogram w/ 2 branches and 8 members at h = 23.7]
  |     |  |--[dendrogram w/ 2 branches and 3 members at h = 1.69]
  |     |  |  |--leaf "64" 
  |     |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.04]
  |     |  |     |--leaf "41" 
  |     |  |     `--leaf "66" 
  |     |  `--[dendrogram w/ 2 branches and 5 members at h = 8.27]
  |     |     |--[dendrogram w/ 2 branches and 2 members at h = 1]
  |     |     |  |--leaf "67" 
  |     |     |  `--leaf "78" 
  |     |     `--[dendrogram w/ 2 branches and 3 members at h = 2.66]
  |     |        |--leaf "79" 
  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 0.282]
  |     |           |--leaf "31" 
  |     |           `--leaf "34" 
  |     `--[dendrogram w/ 2 branches and 16 members at h = 55.9]
  |        |--[dendrogram w/ 2 branches and 7 members at h = 14.5]
  |        |  |--leaf "44" 
  |        |  `--[dendrogram w/ 2 branches and 6 members at h = 5.91]
  |        |     |--leaf "45" 
  |        |     `--[dendrogram w/ 2 branches and 5 members at h = 4.02]
  |        |        |--[dendrogram w/ 2 branches and 2 members at h = 1.03]
  |        |        |  |--leaf "61" 
  |        |        |  `--leaf "75" 
  |        |        `--[dendrogram w/ 2 branches and 3 members at h = 1.39]
  |        |           |--leaf "39" 
  |        |           `--[dendrogram w/ 2 branches and 2 members at h = 0.212]
  |        |              |--leaf "43" 
  |        |              `--leaf "68" 
  |        `--[dendrogram w/ 2 branches and 9 members at h = 19.8]
  |           |--[dendrogram w/ 2 branches and 4 members at h = 2.43]
  |           |  |--[dendrogram w/ 2 branches and 2 members at h = 0.179]
  |           |  |  |--leaf "32" 
  |           |  |  `--leaf "89" 
  |           |  `--[dendrogram w/ 2 branches and 2 members at h = 1.04]
  |           |     |--leaf "40" 
  |           |     `--leaf "69" 
  |           `--[dendrogram w/ 2 branches and 5 members at h = 5.6]
  |              |--[dendrogram w/ 2 branches and 2 members at h = 0.319]
  |              |  |--leaf "33" 
  |              |  `--leaf "65" 
  |              `--[dendrogram w/ 2 branches and 3 members at h = 1.25]
  |                 |--leaf "35" 
  |                 `--[dendrogram w/ 2 branches and 2 members at h = 0.359]
  |                    |--leaf "37" 
  |                    `--leaf "73" 
  `--[dendrogram w/ 2 branches and 45 members at h = 1251]
     |--[dendrogram w/ 2 branches and 27 members at h = 221]
     |  |--[dendrogram w/ 2 branches and 10 members at h = 43.7]
     |  |  |--[dendrogram w/ 2 branches and 5 members at h = 2.91]
     |  |  |  |--[dendrogram w/ 2 branches and 3 members at h = 0.139]
     |  |  |  |  |--leaf "11" 
     |  |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 0.0938]
     |  |  |  |     |--leaf "13" 
     |  |  |  |     `--leaf "27" 
     |  |  |  `--[dendrogram w/ 2 branches and 2 members at h = 1.02]
     |  |  |     |--leaf "7" 
     |  |  |     `--leaf "57" 
     |  |  `--[dendrogram w/ 2 branches and 5 members at h = 14.7]
     |  |     |--[dendrogram w/ 2 branches and 2 members at h = 1.01]
     |  |     |  |--leaf "1" 
     |  |     |  `--leaf "19" 
     |  |     `--[dendrogram w/ 2 branches and 3 members at h = 5.66]
     |  |        |--leaf "30" 
     |  |        `--[dendrogram w/ 2 branches and 2 members at h = 1.03]
     |  |           |--leaf "18" 
     |  |           `--leaf "84" 
     |  `--[dendrogram w/ 2 branches and 17 members at h = 70.5]
     |     |--[dendrogram w/ 2 branches and 8 members at h = 10.6]
     |     |  |--[dendrogram w/ 2 branches and 2 members at h = 0.248]
     |     |  |  |--leaf "58" 
     |     |  |  `--leaf "83" 
     |     |  `--[dendrogram w/ 2 branches and 6 members at h = 7]
     |     |     |--leaf "46" 
     |     |     `--[dendrogram w/ 2 branches and 5 members at h = 4.33]
     |     |        |--[dendrogram w/ 2 branches and 2 members at h = 1.04]
     |     |        |  |--leaf "2" 
     |     |        |  `--leaf "76" 
     |     |        `--[dendrogram w/ 2 branches and 3 members at h = 1.68]
     |     |           |--leaf "15" 
     |     |           `--[dendrogram w/ 2 branches and 2 members at h = 1]
     |     |              |--leaf "54" 
     |     |              `--leaf "56" 
     |     `--[dendrogram w/ 2 branches and 9 members at h = 31.1]
     |        |--[dendrogram w/ 2 branches and 5 members at h = 3.57]
     |        |  |--leaf "50" 
     |        |  `--[dendrogram w/ 2 branches and 4 members at h = 1.88]
     |        |     |--[dendrogram w/ 2 branches and 2 members at h = 0.141]
     |        |     |  |--leaf "49" 
     |        |     |  `--leaf "70" 
     |        |     `--[dendrogram w/ 2 branches and 2 members at h = 0.144]
     |        |        |--leaf "16" 
     |        |        `--leaf "87" 
     |        `--[dendrogram w/ 2 branches and 4 members at h = 12.5]
     |           |--[dendrogram w/ 2 branches and 2 members at h = 1.01]
     |           |  |--leaf "10" 
     |           |  `--leaf "80" 
     |           `--[dendrogram w/ 2 branches and 2 members at h = 4]
     |              |--leaf "17" 
     |              `--leaf "88" 
     `--[dendrogram w/ 2 branches and 18 members at h = 364]
        |--[dendrogram w/ 2 branches and 9 members at h = 58.3]
        |  |--[dendrogram w/ 2 branches and 3 members at h = 10]
        |  |  |--leaf "12" 
        |  |  `--[dendrogram w/ 2 branches and 2 members at h = 6]
        |  |     |--leaf "21" 
        |  |     `--leaf "48" 
        |  `--[dendrogram w/ 2 branches and 6 members at h = 18.9]
        |     |--[dendrogram w/ 2 branches and 3 members at h = 3.95]
        |     |  |--leaf "55" 
        |     |  `--[dendrogram w/ 2 branches and 2 members at h = 0.172]
        |     |     |--leaf "14" 
        |     |     `--leaf "20" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 6]
        |        |--leaf "59" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 2.01]
        |           |--leaf "29" 
        |           `--leaf "86" 
        `--[dendrogram w/ 2 branches and 9 members at h = 159]
           |--[dendrogram w/ 2 branches and 2 members at h = 7]
           |  |--leaf "24" 
           |  `--leaf "81" 
           `--[dendrogram w/ 2 branches and 7 members at h = 81.5]
              |--[dendrogram w/ 2 branches and 3 members at h = 11.3]
              |  |--leaf "82" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 6]
              |     |--leaf "23" 
              |     `--leaf "60" 
              `--[dendrogram w/ 2 branches and 4 members at h = 20]
                 |--[dendrogram w/ 2 branches and 2 members at h = 5]
                 |  |--leaf "26" 
                 |  `--leaf "28" 
                 `--[dendrogram w/ 2 branches and 2 members at h = 7]
                    |--leaf "22" 
                    `--leaf "25" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/fisher/rcomp/tmp/1kj211383233145.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=16.666666666667,height=11.111111111111) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/fisher/rcomp/tmp/210pn1383233145.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=16.666666666667,height=11.111111111111) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
--[dendrogram w/ 2 branches and 5 members at h = 189]
  |--[dendrogram w/ 2 branches and 2 members at h = 37.4]
  |  |--leaf 2 
  |  `--leaf 5 
  `--[dendrogram w/ 2 branches and 3 members at h = 109]
     |--leaf 4 
     `--[dendrogram w/ 2 branches and 2 members at h = 56]
        |--leaf 1 
        `--leaf 3 
> 
> #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/fisher/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/fisher/rcomp/tmp/33e031383233145.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/fisher/rcomp/tmp/4wyce1383233145.tab") 
+ }
> 
> try(system("convert tmp/1kj211383233145.ps tmp/1kj211383233145.png",intern=TRUE))
character(0)
> try(system("convert tmp/210pn1383233145.ps tmp/210pn1383233145.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  2.626   0.603   3.211