R version 3.0.1 (2013-05-16) -- "Good Sport"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(112,118,132,129,121,135,148,148,136,119,104,118,115,126,141,135,125,149,170,170,158,133,114,140,145,150,178,163,172,178,199,199,184,162,146,166,171,180,193,181,183,218,230,242,209,191,172,194,196,196),dim=c(1,50),dimnames=list(c('pallavi'),1:50))
>  y <- array(NA,dim=c(1,50),dimnames=list(c('pallavi'),1:50))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'TRUE'
> par3 = 'FALSE'
> par2 = 'ALL'
> par1 = 'complete'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> par4 <- 'TRUE'
> par3 <- 'FALSE'
> par2 <- 'ALL'
> par1 <- 'complete'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: root
> #To cite this work: Wessa, P., (2012), Hierarchical Clustering (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 50 members at h = 138]
  |--[dendrogram w/ 2 branches and 24 members at h = 46]
  |  |--[dendrogram w/ 2 branches and 14 members at h = 21]
  |  |  |--[dendrogram w/ 2 branches and 6 members at h = 5]
  |  |  |  |--[dendrogram w/ 2 branches and 2 members at h = 1]
  |  |  |  |  |--leaf "25" 
  |  |  |  |  `--leaf "35" 
  |  |  |  `--[dendrogram w/ 2 branches and 4 members at h = 2]
  |  |  |     |--leaf "26" 
  |  |  |     `--[dendrogram w/ 2 branches and 3 members at h = 1]
  |  |  |        |--leaf "18" 
  |  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 0]
  |  |  |           |--leaf "7" 
  |  |  |           `--leaf "8" 
  |  |  `--[dendrogram w/ 2 branches and 8 members at h = 12]
  |  |     |--[dendrogram w/ 2 branches and 3 members at h = 4]
  |  |     |  |--leaf "4" 
  |  |     |  `--[dendrogram w/ 2 branches and 2 members at h = 1]
  |  |     |     |--leaf "3" 
  |  |     |     `--leaf "22" 
  |  |     `--[dendrogram w/ 2 branches and 5 members at h = 6]
  |  |        |--[dendrogram w/ 2 branches and 3 members at h = 1]
  |  |        |  |--leaf "9" 
  |  |        |  `--[dendrogram w/ 2 branches and 2 members at h = 0]
  |  |        |     |--leaf "6" 
  |  |        |     `--leaf "16" 
  |  |        `--[dendrogram w/ 2 branches and 2 members at h = 1]
  |  |           |--leaf "15" 
  |  |           `--leaf "24" 
  |  `--[dendrogram w/ 2 branches and 10 members at h = 22]
  |     |--[dendrogram w/ 2 branches and 6 members at h = 8]
  |     |  |--[dendrogram w/ 2 branches and 2 members at h = 1]
  |     |  |  |--leaf "14" 
  |     |  |  `--leaf "17" 
  |     |  `--[dendrogram w/ 2 branches and 4 members at h = 3]
  |     |     |--leaf "5" 
  |     |     `--[dendrogram w/ 2 branches and 3 members at h = 1]
  |     |        |--leaf "10" 
  |     |        `--[dendrogram w/ 2 branches and 2 members at h = 0]
  |     |           |--leaf "2" 
  |     |           `--leaf "12" 
  |     `--[dendrogram w/ 2 branches and 4 members at h = 11]
  |        |--leaf "11" 
  |        `--[dendrogram w/ 2 branches and 3 members at h = 3]
  |           |--leaf "1" 
  |           `--[dendrogram w/ 2 branches and 2 members at h = 1]
  |              |--leaf "13" 
  |              `--leaf "23" 
  `--[dendrogram w/ 2 branches and 26 members at h = 84]
     |--[dendrogram w/ 2 branches and 4 members at h = 33]
     |  |--[dendrogram w/ 2 branches and 2 members at h = 9]
     |  |  |--leaf "42" 
     |  |  `--leaf "45" 
     |  `--[dendrogram w/ 2 branches and 2 members at h = 12]
     |     |--leaf "43" 
     |     `--leaf "44" 
     `--[dendrogram w/ 2 branches and 22 members at h = 41]
        |--[dendrogram w/ 2 branches and 9 members at h = 14]
        |  |--[dendrogram w/ 2 branches and 5 members at h = 2]
        |  |  |--[dendrogram w/ 2 branches and 2 members at h = 0]
        |  |  |  |--leaf "29" 
        |  |  |  `--leaf "47" 
        |  |  `--[dendrogram w/ 2 branches and 3 members at h = 1]
        |  |     |--leaf "37" 
        |  |     `--[dendrogram w/ 2 branches and 2 members at h = 0]
        |  |        |--leaf "19" 
        |  |        `--leaf "20" 
        |  `--[dendrogram w/ 2 branches and 4 members at h = 8]
        |     |--leaf "21" 
        |     `--[dendrogram w/ 2 branches and 3 members at h = 4]
        |        |--leaf "36" 
        |        `--[dendrogram w/ 2 branches and 2 members at h = 1]
        |           |--leaf "28" 
        |           `--leaf "34" 
        `--[dendrogram w/ 2 branches and 13 members at h = 21]
           |--[dendrogram w/ 2 branches and 6 members at h = 6]
           |  |--[dendrogram w/ 2 branches and 2 members at h = 1]
           |  |  |--leaf "33" 
           |  |  `--leaf "41" 
           |  `--[dendrogram w/ 2 branches and 4 members at h = 3]
           |     |--[dendrogram w/ 2 branches and 2 members at h = 0]
           |     |  |--leaf "27" 
           |     |  `--leaf "30" 
           |     `--[dendrogram w/ 2 branches and 2 members at h = 1]
           |        |--leaf "38" 
           |        `--leaf "40" 
           `--[dendrogram w/ 2 branches and 7 members at h = 8]
              |--[dendrogram w/ 2 branches and 4 members at h = 3]
              |  |--[dendrogram w/ 2 branches and 2 members at h = 0]
              |  |  |--leaf "31" 
              |  |  `--leaf "32" 
              |  `--[dendrogram w/ 2 branches and 2 members at h = 0]
              |     |--leaf "49" 
              |     `--leaf "50" 
              `--[dendrogram w/ 2 branches and 3 members at h = 3]
                 |--leaf "46" 
                 `--[dendrogram w/ 2 branches and 2 members at h = 1]
                    |--leaf "39" 
                    `--leaf "48" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/fisher/rcomp/tmp/14n351379322794.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/fisher/rcomp/tmp/21oug1379322794.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
> 
> #Note: the /var/fisher/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/fisher/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/fisher/rcomp/tmp/3qqty1379322794.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/fisher/rcomp/tmp/4rdr61379322794.tab") 
+ }
> 
> try(system("convert tmp/14n351379322794.ps tmp/14n351379322794.png",intern=TRUE))
character(0)
> try(system("convert tmp/21oug1379322794.ps tmp/21oug1379322794.png",intern=TRUE))
convert: unable to open image `tmp/21oug1379322794.ps':  @ error/blob.c/OpenBlob/2587.
convert: missing an image filename `tmp/21oug1379322794.png' @ error/convert.c/ConvertImageCommand/3011.
character(0)
attr(,"status")
[1] 1
Warning message:
running command 'convert tmp/21oug1379322794.ps tmp/21oug1379322794.png' had status 1 
> 
> 
> proc.time()
   user  system elapsed 
  0.951   0.245   1.173