R version 3.1.0 (2014-04-10) -- "Spring Dance" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: i686-pc-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(31124,26551,30651,25859,25100,25778,20418,18688,20424,24776,19814,12738,31566,30111,30019,31934,25826,26835,20205,17789,20520,22518,15572,11509,25447,24090,27786,26195,20516,22759,19028,16971,20036,22485,18730,14538,27561,25985,34670,32066,27186,29586,21359,21553,19573,24256,22380,16167,27297,28287,33474,28229,28785,25597,18130,20198,22849,23118,21925,20801,18785,20659,29367,23992,20645,22356,17902,15879,16963,21035,17988,10437) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P., (2012), Standard Deviation Plot (v1.0.2) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_sdplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 72 > (np <- floor(n / par1)) [1] 6 > arr <- array(NA,dim=c(par1,np+1)) > ari <- array(0,dim=par1) > j <- 0 > for (i in 1:n) + { + j = j + 1 + ari[j] = ari[j] + 1 + arr[j,ari[j]] <- x[i] + if (j == par1) j = 0 + } > ari [1] 6 6 6 6 6 6 6 6 6 6 6 6 > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 31124 31566 25447 27561 27297 18785 NA [2,] 26551 30111 24090 25985 28287 20659 NA [3,] 30651 30019 27786 34670 33474 29367 NA [4,] 25859 31934 26195 32066 28229 23992 NA [5,] 25100 25826 20516 27186 28785 20645 NA [6,] 25778 26835 22759 29586 25597 22356 NA [7,] 20418 20205 19028 21359 18130 17902 NA [8,] 18688 17789 16971 21553 20198 15879 NA [9,] 20424 20520 20036 19573 22849 16963 NA [10,] 24776 22518 22485 24256 23118 21035 NA [11,] 19814 15572 18730 22380 21925 17988 NA [12,] 12738 11509 14538 16167 20801 10437 NA > arr.sd <- array(NA,dim=par1) > arr.range <- array(NA,dim=par1) > arr.iqr <- array(NA,dim=par1) > for (j in 1:par1) + { + arr.sd[j] <- sqrt(var(arr[j,],na.rm=TRUE)) + arr.range[j] <- max(arr[j,],na.rm=TRUE) - min(arr[j,],na.rm=TRUE) + arr.iqr[j] <- quantile(arr[j,],0.75,na.rm=TRUE) - quantile(arr[j,],0.25,na.rm=TRUE) + } > overall.sd <- sqrt(var(x)) > overall.range <- max(x) - min(x) > overall.iqr <- quantile(x,0.75) - quantile(x,0.25) > postscript(file="/var/wessaorg/rcomp/tmp/1gzea1398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.sd,type='b',ylab='S.D.',main='Standard Deviation Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.sd,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2yte21398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.range,type='b',ylab='range',main='Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.range,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/31pts1398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.iqr,type='b',ylab='IQR',main='Interquartile Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.iqr,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/43epn1398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(t(arr)) > names(z) <- c(1:par1) > (boxplot(z,notch=TRUE,col='grey',xlab='Periodic Index',ylab='Value',main='Notched Box Plots - Periodic Subseries')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [1,] 18785 20659 27786 23992 20516 22356.0 17902.0 15879.0 19573 21035 15572 [2,] 25447 24090 29367 25859 20645 22759.0 18130.0 16971.0 19573 22485 17988 [3,] 27429 26268 30335 27212 25463 25687.5 19616.5 18238.5 20230 22818 19272 [4,] 31124 28287 33474 31934 27186 26835.0 20418.0 20198.0 20520 24256 21925 [5,] 31566 30111 34670 32066 28785 29586.0 21359.0 21553.0 20520 24776 22380 [,12] [1,] 10437 [2,] 11509 [3,] 13638 [4,] 16167 [5,] 20801 $n [1] 6 6 6 6 6 6 6 6 6 6 6 6 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 23767.15 23560.8 27685.85 23293.43 21243.84 23058.35 18140.67 16156.98 [2,] 31090.85 28975.2 32984.15 31130.57 29682.16 28316.65 21092.33 20320.02 [,9] [,10] [,11] [,12] [1,] 19619.15 21675.65 16732.51 10633.44 [2,] 20840.85 23960.35 21811.49 16642.56 $out [1] 22849 16963 $group [1] 9 9 $names [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" "12" Warning message: In bxp(list(stats = c(18785, 25447, 27429, 31124, 31566, 20659, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5j44e1398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(arr) > names(z) <- c(1:np) > (boxplot(z,notch=TRUE,col='grey',xlab='Block Index',ylab='Value',main='Notched Box Plots - Sequential Blocks')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 12738 11509 14538.0 16167.0 18130.0 15879.0 NA [2,] 20116 18997 18879.0 21456.0 21363.0 17432.5 NA [3,] 24938 24172 21500.5 25120.5 24357.5 19715.0 NA [4,] 26205 30065 24768.5 28573.5 28258.0 21695.5 NA [5,] 31124 31934 27786.0 34670.0 33474.0 23992.0 NA $n [1] 12 12 12 12 12 12 0 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 22160.77 19123.81 18814.26 21874.16 21212.64 17770.62 NA [2,] 27715.23 29220.19 24186.74 28366.84 27502.36 21659.38 NA $out [1] 29367 10437 $group [1] 6 6 $names [1] "1" "2" "3" "4" "5" "6" NA Warning message: In bxp(list(stats = c(12738, 20116, 24938, 26205, 31124, 11509, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6f1mw1398525557.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(cbind(arr.sd,arr.range,arr.iqr)) > names(z) <- list('S.D.','Range','IQR') > (boxplot(z,notch=TRUE,col='grey',ylab='Overall Variability',main='Notched Box Plots')) $stats [,1] [,2] [,3] [1,] 1348.964 3457.0 807.250 [2,] 1995.060 5780.0 2327.625 [3,] 2638.409 7057.0 3231.000 [4,] 3379.111 8860.5 4133.625 [5,] 4650.777 12781.0 5087.250 $n [1] 12 12 12 $conf [,1] [,2] [,3] [1,] 2007.134 5651.963 2407.271 [2,] 3269.684 8462.037 4054.729 $out numeric(0) $group numeric(0) $names [1] "S.D." "Range" "IQR" Warning message: In bxp(list(stats = c(1348.96399754281, 1995.05985190889, 2638.40873178751, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > > try(system("convert tmp/1gzea1398525557.ps tmp/1gzea1398525557.png",intern=TRUE)) character(0) > try(system("convert tmp/2yte21398525557.ps tmp/2yte21398525557.png",intern=TRUE)) character(0) > try(system("convert tmp/31pts1398525557.ps tmp/31pts1398525557.png",intern=TRUE)) character(0) > try(system("convert tmp/43epn1398525557.ps tmp/43epn1398525557.png",intern=TRUE)) character(0) > try(system("convert tmp/5j44e1398525557.ps tmp/5j44e1398525557.png",intern=TRUE)) character(0) > try(system("convert tmp/6f1mw1398525557.ps tmp/6f1mw1398525557.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 4.032 0.789 4.842