R version 3.0.2 (2013-09-25) -- "Frisbee Sailing"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
>
> RC.capture <- function (expression, collapse = NULL) {
+ resultConn <- textConnection('RC.resultText', open = 'w', local=TRUE)
+ sink(resultConn)
+ on.exit(function() {
+ sink()
+ close(resultConn)
+ })
+ expression
+ on.exit(NULL)
+ sink()
+ close(resultConn)
+ return(paste(c(RC.resultText, ''), collapse = collapse, sep = ''))
+ }
> RC.texteval <- function (sourceText, collapse = NULL, echo = TRUE) {
+ sourceConn <- textConnection(sourceText, open = 'r')
+ on.exit(close(sourceConn))
+ result <- RC.capture(source(file = sourceConn, local = FALSE, echo = echo, print.eval = TRUE), collapse = collapse)
+ on.exit(NULL)
+ close(sourceConn)
+ res <- ''
+ for(i in 1:length(result)) {
+ if (result[i]!='') res <- paste(res,result[i],'
+ ',sep='')
+ }
+ return(res)
+ }
> y <- c(0.246377
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> ylab = 'y'
> xlab = 'x'
> main = 'Scatterplot and histograms'
> #'GNU S' R Code compiled by R2WASP v. 1.2.327 ()
> #Author: root
> #To cite this work: Wessa P., (2014), Pearson Correlation (v1.0.9) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_correlation.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #
> x <- x[!is.na(y)]
> y <- y[!is.na(y)]
> y <- y[!is.na(x)]
> x <- x[!is.na(x)]
> postscript(file="/var/wessaorg/rcomp/tmp/1wyxd1407926426.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556)
> histx <- hist(x, plot=FALSE)
> histy <- hist(y, plot=FALSE)
> maxcounts <- max(c(histx$counts, histx$counts))
> xrange <- c(min(x),max(x))
> yrange <- c(min(y),max(y))
> nf <- layout(matrix(c(2,0,1,3),2,2,byrow=TRUE), c(3,1), c(1,3), TRUE)
> par(mar=c(4,4,1,1))
> plot(x, y, xlim=xrange, ylim=yrange, xlab=xlab, ylab=ylab, sub=main)
> par(mar=c(0,4,1,1))
> barplot(histx$counts, axes=FALSE, ylim=c(0, maxcounts), space=0)
> par(mar=c(4,0,1,1))
> barplot(histy$counts, axes=FALSE, xlim=c(0, maxcounts), space=0, horiz=TRUE)
> dev.off()
null device
1
> lx = length(x)
> makebiased = (lx-1)/lx
> varx = var(x)*makebiased
> vary = var(y)*makebiased
> corxy <- cor.test(x,y,method='pearson', na.rm = T)
> cxy <- as.matrix(corxy$estimate)[1,1]
>
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
>
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Pearson Product Moment Correlation - Ungrouped Data',3,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Statistic',1,TRUE)
> a<-table.element(a,'Variable X',1,TRUE)
> a<-table.element(a,'Variable Y',1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/arithmetic_mean.htm','Mean',''),header=TRUE)
> a<-table.element(a,mean(x))
> a<-table.element(a,mean(y))
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/biased.htm','Biased Variance',''),header=TRUE)
> a<-table.element(a,varx)
> a<-table.element(a,vary)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/biased1.htm','Biased Standard Deviation',''),header=TRUE)
> a<-table.element(a,sqrt(varx))
> a<-table.element(a,sqrt(vary))
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/covariance.htm','Covariance',''),header=TRUE)
> a<-table.element(a,cov(x,y),2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/pearson_correlation.htm','Correlation',''),header=TRUE)
> a<-table.element(a,cxy,2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/coeff_of_determination.htm','Determination',''),header=TRUE)
> a<-table.element(a,cxy*cxy,2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/ttest_statistic.htm','T-Test',''),header=TRUE)
> a<-table.element(a,as.matrix(corxy$statistic)[1,1],2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'p-value (2 sided)',header=TRUE)
> a<-table.element(a,(p2 <- as.matrix(corxy$p.value)[1,1]),2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'p-value (1 sided)',header=TRUE)
> a<-table.element(a,p2/2,2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Degrees of Freedom',header=TRUE)
> a<-table.element(a,lx-2,2)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Number of Observations',header=TRUE)
> a<-table.element(a,lx,2)
> a<-table.row.end(a)
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/2ubjd1407926426.tab")
> library(moments)
> library(nortest)
> jarque.x <- jarque.test(x)
> jarque.y <- jarque.test(y)
> if(lx>7) {
+ ad.x <- ad.test(x)
+ ad.y <- ad.test(y)
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Normality Tests',1,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,paste('',RC.texteval('jarque.x'),'',sep=''))
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,paste('',RC.texteval('jarque.y'),'',sep=''))
> a<-table.row.end(a)
> if(lx>7) {
+ a<-table.row.start(a)
+ a<-table.element(a,paste('',RC.texteval('ad.x'),'',sep=''))
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,paste('',RC.texteval('ad.y'),'',sep=''))
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3uvtz1407926426.tab")
> library(car)
> postscript(file="/var/wessaorg/rcomp/tmp/4yhhs1407926426.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556)
> qq.plot(x,main='QQplot of variable x')
Warning message:
'qq.plot' is deprecated.
Use 'qqPlot' instead.
See help("Deprecated") and help("car-deprecated").
> dev.off()
null device
1
> postscript(file="/var/wessaorg/rcomp/tmp/5cj8c1407926426.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556)
> qq.plot(y,main='QQplot of variable y')
Warning message:
'qq.plot' is deprecated.
Use 'qqPlot' instead.
See help("Deprecated") and help("car-deprecated").
> dev.off()
null device
1
>
> try(system("convert tmp/1wyxd1407926426.ps tmp/1wyxd1407926426.png",intern=TRUE))
character(0)
> try(system("convert tmp/4yhhs1407926426.ps tmp/4yhhs1407926426.png",intern=TRUE))
character(0)
> try(system("convert tmp/5cj8c1407926426.ps tmp/5cj8c1407926426.png",intern=TRUE))
character(0)
>
>
> proc.time()
user system elapsed
4.955 0.235 5.201