R version 3.0.3 (2014-03-06) -- "Warm Puppy"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: i686-pc-linux-gnu (32-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> x <- array(list(7.00
+ ,.00
+ ,109.00
+ ,13.10
+ ,68.00
+ ,32.00
+ ,258.00
+ ,183.00
+ ,137.00
+ ,95.00
+ ,7.00
+ ,1.00
+ ,112.00
+ ,12.90
+ ,65.00
+ ,19.00
+ ,449.00
+ ,245.00
+ ,134.00
+ ,85.00
+ ,8.00
+ ,.00
+ ,124.00
+ ,14.10
+ ,64.00
+ ,22.00
+ ,441.00
+ ,268.00
+ ,147.00
+ ,100.00
+ ,8.00
+ ,1.00
+ ,125.00
+ ,16.20
+ ,67.00
+ ,41.00
+ ,234.00
+ ,146.00
+ ,124.00
+ ,85.00
+ ,8.00
+ ,.00
+ ,127.00
+ ,21.50
+ ,93.00
+ ,52.00
+ ,202.00
+ ,131.00
+ ,104.00
+ ,95.00
+ ,9.00
+ ,.00
+ ,130.00
+ ,17.50
+ ,68.00
+ ,44.00
+ ,308.00
+ ,155.00
+ ,118.00
+ ,80.00
+ ,11.00
+ ,1.00
+ ,139.00
+ ,30.70
+ ,89.00
+ ,28.00
+ ,305.00
+ ,179.00
+ ,119.00
+ ,65.00
+ ,12.00
+ ,1.00
+ ,150.00
+ ,28.40
+ ,69.00
+ ,18.00
+ ,369.00
+ ,198.00
+ ,103.00
+ ,110.00
+ ,12.00
+ ,.00
+ ,146.00
+ ,25.10
+ ,67.00
+ ,24.00
+ ,312.00
+ ,194.00
+ ,128.00
+ ,70.00
+ ,13.00
+ ,1.00
+ ,155.00
+ ,31.50
+ ,68.00
+ ,23.00
+ ,413.00
+ ,225.00
+ ,136.00
+ ,95.00
+ ,13.00
+ ,.00
+ ,156.00
+ ,39.90
+ ,89.00
+ ,39.00
+ ,206.00
+ ,142.00
+ ,95.00
+ ,110.00
+ ,14.00
+ ,1.00
+ ,153.00
+ ,42.10
+ ,90.00
+ ,26.00
+ ,253.00
+ ,191.00
+ ,121.00
+ ,90.00
+ ,14.00
+ ,.00
+ ,160.00
+ ,45.60
+ ,93.00
+ ,45.00
+ ,174.00
+ ,139.00
+ ,108.00
+ ,100.00
+ ,15.00
+ ,1.00
+ ,158.00
+ ,51.20
+ ,93.00
+ ,45.00
+ ,158.00
+ ,124.00
+ ,90.00
+ ,80.00
+ ,16.00
+ ,1.00
+ ,160.00
+ ,35.90
+ ,66.00
+ ,31.00
+ ,302.00
+ ,133.00
+ ,101.00
+ ,134.00
+ ,17.00
+ ,1.00
+ ,153.00
+ ,34.80
+ ,70.00
+ ,29.00
+ ,204.00
+ ,118.00
+ ,120.00
+ ,134.00
+ ,17.00
+ ,.00
+ ,174.00
+ ,44.70
+ ,70.00
+ ,49.00
+ ,187.00
+ ,104.00
+ ,103.00
+ ,165.00
+ ,17.00
+ ,1.00
+ ,176.00
+ ,60.10
+ ,92.00
+ ,29.00
+ ,188.00
+ ,129.00
+ ,130.00
+ ,120.00
+ ,17.00
+ ,.00
+ ,171.00
+ ,42.60
+ ,69.00
+ ,38.00
+ ,172.00
+ ,130.00
+ ,103.00
+ ,130.00
+ ,19.00
+ ,1.00
+ ,156.00
+ ,37.20
+ ,72.00
+ ,21.00
+ ,216.00
+ ,119.00
+ ,81.00
+ ,85.00
+ ,19.00
+ ,.00
+ ,174.00
+ ,54.60
+ ,86.00
+ ,37.00
+ ,184.00
+ ,118.00
+ ,101.00
+ ,85.00
+ ,20.00
+ ,.00
+ ,178.00
+ ,64.00
+ ,86.00
+ ,34.00
+ ,225.00
+ ,148.00
+ ,135.00
+ ,160.00
+ ,23.00
+ ,.00
+ ,180.00
+ ,73.80
+ ,97.00
+ ,57.00
+ ,171.00
+ ,108.00
+ ,98.00
+ ,165.00
+ ,23.00
+ ,.00
+ ,175.00
+ ,51.10
+ ,71.00
+ ,33.00
+ ,224.00
+ ,131.00
+ ,113.00
+ ,95.00
+ ,23.00
+ ,.00
+ ,179.00
+ ,71.50
+ ,95.00
+ ,52.00
+ ,225.00
+ ,127.00
+ ,101.00
+ ,195.00)
+ ,dim=c(10
+ ,25)
+ ,dimnames=list(c('Age'
+ ,'Sex'
+ ,'Height'
+ ,'Weight'
+ ,'BMP'
+ ,'Fev1'
+ ,'Rv'
+ ,'Frc'
+ ,'Tlc'
+ ,'Pemax')
+ ,1:25))
>  y <- array(NA,dim=c(10,25),dimnames=list(c('Age','Sex','Height','Weight','BMP','Fev1','Rv','Frc','Tlc','Pemax'),1:25))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par3 = '0'
> par2 = 'TRUE'
> par1 = '3'
> ylab = 'Scores'
> xlab = 'Variable Names'
> main = 'Cystic Fibrosis Data'
> par3 <- '0'
> par2 <- 'TRUE'
> par1 <- '3'
> par1 <- as.numeric(par1) #colour
> par2<- as.logical(par2) # Notches ?
> par3<-as.numeric(par3) # % trim
> if(par3>45){par3<-45;warning('trim limited to 45%')}
> if(par3<0){par3<-0;warning('negative trim makes no sense. Trim is zero.')}
> lotrm<-as.integer(length(y[1,])*par3/100)+1
> hitrm<-as.integer(length(y[1,])*(100-par3)/100)
> y1<-array(dim=c(dim(y)[1], hitrm-lotrm+1), dimnames=list(dimnames(y)[[1]], 1:(hitrm-lotrm+1) ))
> for(i in 1:dim(y)[1]){
+ tmp<-order(y[i,])
+ y1[i,]<- y[i, tmp[lotrm:hitrm] ]
+ }
> postscript(file="/var/wessaorg/rcomp/tmp/1vag11394548757.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> pairs(t(y))
> dev.off()
null device 
          1 
> y<-y1
> z <- as.data.frame(t(y))
> postscript(file="/var/wessaorg/rcomp/tmp/2xvqv1394548757.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> (r<-boxplot(z ,xlab=xlab,ylab=ylab,main=main,notch=par2,col=par1))
$stats
     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
[1,]    7    0  109 12.9   64   18  158  104   81    65
[2,]   11    0  139 25.1   68   26  188  127  101    85
[3,]   14    0  156 37.2   71   33  225  139  113    95
[4,]   17    1  174 51.1   90   44  305  183  128   130
[5,]   23    1  180 73.8   97   57  449  245  147   195

$n
 [1] 25 25 25 25 25 25 25 25 25 25

$conf
       [,1]   [,2]   [,3]   [,4]   [,5]   [,6]    [,7]    [,8]    [,9]  [,10]
[1,] 12.104 -0.316 144.94 28.984 64.048 27.312 188.028 121.304 104.468  80.78
[2,] 15.896  0.316 167.06 45.416 77.952 38.688 261.972 156.696 121.532 109.22

$out
[1] 268

$group
[1] 8

$names
 [1] "Age"    "Sex"    "Height" "Weight" "BMP"    "Fev1"   "Rv"     "Frc"   
 [9] "Tlc"    "Pemax" 

Warning message:
In bxp(list(stats = c(7, 11, 14, 17, 23, 0, 0, 0, 1, 1, 109, 139,  :
  some notches went outside hinges ('box'): maybe set notch=FALSE
> dev.off()
null device 
          1 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,hyperlink('http://www.xycoon.com/overview.htm','Boxplot statistics','Boxplot overview'),6,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_whisker.htm','lower whisker','definition of lower whisker'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/lower_hinge.htm','lower hinge','definition of lower hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/central_tendency.htm','median','definitions about measures of central tendency'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_hinge.htm','upper hinge','definition of upper hinge'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/upper_whisker.htm','upper whisker','definition of upper whisker'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ for (j in 1:5)
+ {
+ a<-table.element(a,signif(r$stats[j,i], digits=4))
+ }
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3c15z1394548757.tab") 
> if (par2){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Boxplot Notches',4,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Variable',1,TRUE)
+ a<-table.element(a,'lower bound',1,TRUE)
+ a<-table.element(a,'median',1,TRUE)
+ a<-table.element(a,'upper bound',1,TRUE)
+ a<-table.row.end(a)
+ for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(r$conf[1,i], digits=4))
+ a<-table.element(a, signif(r$stats[3,i], digits=4))
+ a<-table.element(a,signif(r$conf[2,i], digits=4))
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/42llb1394548757.tab") 
+ }
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Boxplot Means',4,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Variable',1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/trimmed_mean.htm','trimmed mean','definition of trimmed mean'),1,TRUE)
> a<-table.element(a,hyperlink('http://www.xycoon.com/unbiased1.htm','unbiased SD','definition of unbiased SD'),1,TRUE)
> a<-table.row.end(a)
> for (i in 1:length(y[,1]))
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,dimnames(t(x))[[2]][i],1,TRUE)
+ a<-table.element(a,signif(mean(z[i], trim=par3/100, na.rm=TRUE), digits=4))
+ a<-table.element(a,signif(sd(z[i], na.rm=TRUE), digits=4))
+ a<-table.row.end(a)
+ }
Error in is.data.frame(x) : 
  (list) object cannot be coerced to type 'double'
Calls: table.element -> paste -> sd -> var -> is.data.frame
In addition: Warning message:
In mean.default(z[i], trim = par3/100, na.rm = TRUE) :
  argument is not numeric or logical: returning NA
Execution halted