R version 3.0.2 (2013-09-25) -- "Frisbee Sailing" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(5.06,5.05,5.05,5.04,5.06,5.07,5.09,5.08,5.09,5.09,5.09,5.1,5.12,5.14,5.14,5.14,5.13,5.15,5.16,5.17,5.17,5.18,5.21,5.19,5.22,5.24,5.21,5.24,5.28,5.3,5.32,5.32,5.29,5.3,5.32,5.31,5.35,5.36,5.33,5.35,5.35,5.35,5.37,5.39,5.4,5.39,5.4,5.4,5.4,5.38,5.32,5.36,5.35,5.39,5.4,5.41,5.36,5.38,5.41,5.35,5.4,5.41,5.42,5.41,5.41,5.42,5.4,5.42,5.41,5.34,5.46,5.45,5.47,5.48,5.43,5.5,5.51,5.51,5.52,5.55,5.55,5.48,5.61,5.59,5.68,5.71,5.68,5.7,5.76,5.78,5.77,5.85,5.82,5.84,5.89,5.84) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 96 > (np <- floor(n / par1)) [1] 8 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 5.06 5.12 5.22 5.35 5.40 5.40 5.47 5.68 [2,] 5.05 5.14 5.24 5.36 5.38 5.41 5.48 5.71 [3,] 5.05 5.14 5.21 5.33 5.32 5.42 5.43 5.68 [4,] 5.04 5.14 5.24 5.35 5.36 5.41 5.50 5.70 [5,] 5.06 5.13 5.28 5.35 5.35 5.41 5.51 5.76 [6,] 5.07 5.15 5.30 5.35 5.39 5.42 5.51 5.78 [7,] 5.09 5.16 5.32 5.37 5.40 5.40 5.52 5.77 [8,] 5.08 5.17 5.32 5.39 5.41 5.42 5.55 5.85 [9,] 5.09 5.17 5.29 5.40 5.36 5.41 5.55 5.82 [10,] 5.09 5.18 5.30 5.39 5.38 5.34 5.48 5.84 [11,] 5.09 5.21 5.32 5.40 5.41 5.46 5.61 5.89 [12,] 5.10 5.19 5.31 5.40 5.35 5.45 5.59 5.84 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 5.072500 5.158333 5.279167 5.370000 5.375833 5.412500 5.516667 5.776667 > arr.sd [1] 0.02005674 0.02657180 0.04077841 0.02486326 0.02810963 0.02927146 0.05140452 [8] 0.07227892 > arr.range [1] 0.06 0.09 0.11 0.07 0.09 0.12 0.18 0.21 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean -0.33704 0.06959 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) -18.543 9.018 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean -1.027 0.213 > postscript(file="/var/wessaorg/rcomp/tmp/1bv1k1416770144.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2wfbr1416770144.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/30zwa1416770144.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4jxiq1416770144.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/5igty1416770144.tab") > > try(system("convert tmp/1bv1k1416770144.ps tmp/1bv1k1416770144.png",intern=TRUE)) character(0) > try(system("convert tmp/2wfbr1416770144.ps tmp/2wfbr1416770144.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.899 0.149 1.054