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Type 'q()' to quit R. > x <- c(82.75,83.4,84.12,83.88,83.61,83.58,83.58,83.27,83.59,83.64,83.72,83.88,83.61,85.36,87.2,88.28,88.64,88.67,88.34,89.21,89.55,89.65,88.43,91.15,94.11,96.78,97.94,97.57,96.48,96.18,95,93.84,95.54,94.06,93.92,92.55,93.88,92.19,91.42,91.39,89.12,90.27,91.76,95.68,97.54,98.47,100.11,99.9,101.11,98.86,102.71,102.02,100.61,100.62,99.51,98.63,97.44,96.5,94.3,92.92,96.07,95,93.27,91.94,91.62,91.01,90.62,97.72,99.09,99.72,100.22,99.15,101.16,101.8,103.31,101.19,99.09,95.91,94.56,95.76,100.36,102.67,103.58,100.89,103.46,104.86,104.88,104.46,103.83,101,99.36,96.71,95.23,95.62,95.8,94.79,95.39,94.9,94.84,94.68,94.17,94.1,93.84,94.2,97.76,98.26,99.63,98.75) > par4 = 'P1 P5 Q1 Q3 P95 P99' > par3 = '5' > par2 = '12' > par1 = '200' > par4 <- 'P1 P5 Q1 Q3 P95 P99' > par3 <- '5' > par2 <- '12' > par1 <- '200' > #'GNU S' R Code compiled by R2WASP v. 1.2.327 (Mon, 05 Oct 2015 17:06:50 +0100) > #Author: root > #To cite this work: Wessa P., (2015), Blocked Bootstrap Plot for Central Tendency (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_bootstrapplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > par2 <- as.numeric(par2) > par3 <- as.numeric(par3) > if (par1 < 10) par1 = 10 > if (par1 > 5000) par1 = 5000 > if (par2 < 3) par2 = 3 > if (par2 > length(x)) par2 = length(x) > library(modeest) This is package 'modeest' written by P. PONCET. For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'. > library(lattice) > library(boot) Attaching package: 'boot' The following object is masked from 'package:lattice': melanoma > boot.stat <- function(s) + { + s.mean <- mean(s) + s.median <- median(s) + s.midrange <- (max(s) + min(s)) / 2 + s.mode <- mlv(s,method='mfv')$M + s.kernelmode <- mlv(s, method='kernel')$M + c(s.mean, s.median, s.midrange, s.mode, s.kernelmode) + } > (r <- tsboot(x, boot.stat, R=par1, l=12, sim='fixed')) BLOCK BOOTSTRAP FOR TIME SERIES Fixed Block Length of 12 Call: tsboot(tseries = x, statistic = boot.stat, R = par1, l = 12, sim = "fixed") Bootstrap Statistics : original bias std. error t1* 94.61361 0.1022769 1.551730 t2* 95.11500 0.1694250 1.676822 t3* 93.81500 0.0187750 0.914042 t4* 89.83333 3.4274738 5.837973 t5* 95.43074 0.5628445 3.183518 > postscript(file="/var/wessaorg/rcomp/tmp/1k1qx1449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2faj31449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3bv8v1449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/42rc81449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5y7ky1449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6qr3a1449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/7xvp51449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/89u861449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange') > dev.off() null device 1 > z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5]) ) > colnames(z) <- list('mean','median','midrange','mode','mode.k.dens') > postscript(file="/var/wessaorg/rcomp/tmp/9g6vb1449050247.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency') Warning message: In bxp(list(stats = c(91.2638888888889, 93.672037037037, 94.6110185185185, : some notches went outside hinges ('box'): maybe set notch=FALSE > grid() > dev.off() null device 1 > if (par4 == 'P1 P5 Q1 Q3 P95 P99') { + myq.1 <- 0.01 + myq.2 <- 0.05 + myq.3 <- 0.95 + myq.4 <- 0.99 + myl.1 <- 'P1' + myl.2 <- 'P5' + myl.3 <- 'P95' + myl.4 <- 'P99' + } > if (par4 == 'P0.5 P2.5 Q1 Q3 P97.5 P99.5') { + myq.1 <- 0.005 + myq.2 <- 0.025 + myq.3 <- 0.975 + myq.4 <- 0.995 + myl.1 <- 'P0.5' + myl.2 <- 'P2.5' + myl.3 <- 'P97.5' + myl.4 <- 'P99.5' + } > if (par4 == 'P10 P20 Q1 Q3 P80 P90') { + myq.1 <- 0.10 + myq.2 <- 0.20 + myq.3 <- 0.80 + myq.4 <- 0.90 + myl.1 <- 'P10' + myl.2 <- 'P20' + myl.3 <- 'P80' + myl.4 <- 'P90' + } > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimation Results of Blocked Bootstrap',10,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'statistic',header=TRUE) > a<-table.element(a,myl.1,header=TRUE) > a<-table.element(a,myl.2,header=TRUE) > a<-table.element(a,'Q1',header=TRUE) > a<-table.element(a,'Estimate',header=TRUE) > a<-table.element(a,'Q3',header=TRUE) > a<-table.element(a,myl.3,header=TRUE) > a<-table.element(a,myl.4,header=TRUE) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,'IQR',header=TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mean',header=TRUE) > q1 <- quantile(r$t[,1],0.25)[[1]] > q3 <- quantile(r$t[,1],0.75)[[1]] > p01 <- quantile(r$t[,1],myq.1)[[1]] > p05 <- quantile(r$t[,1],myq.2)[[1]] > p95 <- quantile(r$t[,1],myq.3)[[1]] > p99 <- quantile(r$t[,1],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[1],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element( a,signif( sqrt(var(r$t[,1])),par3 ) ) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'median',header=TRUE) > q1 <- quantile(r$t[,2],0.25)[[1]] > q3 <- quantile(r$t[,2],0.75)[[1]] > p01 <- quantile(r$t[,2],myq.1)[[1]] > p05 <- quantile(r$t[,2],myq.2)[[1]] > p95 <- quantile(r$t[,2],myq.3)[[1]] > p99 <- quantile(r$t[,2],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[2],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,2])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'midrange',header=TRUE) > q1 <- quantile(r$t[,3],0.25)[[1]] > q3 <- quantile(r$t[,3],0.75)[[1]] > p01 <- quantile(r$t[,3],myq.1)[[1]] > p05 <- quantile(r$t[,3],myq.2)[[1]] > p95 <- quantile(r$t[,3],myq.3)[[1]] > p99 <- quantile(r$t[,3],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[3],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,3])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode',header=TRUE) > q1 <- quantile(r$t[,4],0.25)[[1]] > q3 <- quantile(r$t[,4],0.75)[[1]] > p01 <- quantile(r$t[,4],myq.1)[[1]] > p05 <- quantile(r$t[,4],myq.2)[[1]] > p95 <- quantile(r$t[,4],myq.3)[[1]] > p99 <- quantile(r$t[,4],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[4],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,4])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode k.dens',header=TRUE) > q1 <- quantile(r$t[,5],0.25)[[1]] > q3 <- quantile(r$t[,5],0.75)[[1]] > p01 <- quantile(r$t[,5],myq.1)[[1]] > p05 <- quantile(r$t[,5],myq.2)[[1]] > p95 <- quantile(r$t[,5],myq.3)[[1]] > p99 <- quantile(r$t[,5],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[5],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,5])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/109u0f1449050247.tab") > > try(system("convert tmp/1k1qx1449050247.ps tmp/1k1qx1449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/2faj31449050247.ps tmp/2faj31449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/3bv8v1449050247.ps tmp/3bv8v1449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/42rc81449050247.ps tmp/42rc81449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/5y7ky1449050247.ps tmp/5y7ky1449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/6qr3a1449050247.ps tmp/6qr3a1449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/7xvp51449050247.ps tmp/7xvp51449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/89u861449050247.ps tmp/89u861449050247.png",intern=TRUE)) character(0) > try(system("convert tmp/9g6vb1449050247.ps tmp/9g6vb1449050247.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 4.212 0.586 4.837