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Type 'q()' to quit R. > x <- c(173019,173690,172439,171914,171968,169500,173898,172308,171568,164939,161275,160770,162466,160185,154836,154103,150495,142707,149962,149967,144572,143819,141070,144119,145330,143279,139063,139202,133632,134476,141859,140693,138047,138346,140167,146796,152228,155410,159032,160312,157687,160141,167421,167628,164403,163405,163229,171154,173323,172381,168983,165380,161641,161933,172018,168455,164332,161193,157645,161694,163411,161834,159511,156359,154223,151497,160607,159672,155601,154668,153960,157307,165218,165616,162212,159787,157454,156485,165887,166836,163541,163973,164805,167521,174347,173374,172198,171055,168385,167281,177670,177280,174846,174476,174595,178392,185345,183293,181081,177795,173552,170734,179293,178659,175894,174815,173506,175376) > par4 = 'P1 P5 Q1 Q3 P95 P99' > par3 = '5' > par2 = '12' > par1 = '50' > par4 <- 'P1 P5 Q1 Q3 P95 P99' > par3 <- '5' > par2 <- '12' > par1 <- '50' > #'GNU S' R Code compiled by R2WASP v. 1.2.327 (Mon, 05 Oct 2015 17:06:50 +0100) > #Author: root > #To cite this work: Wessa P., (2015), Blocked Bootstrap Plot for Central Tendency (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_bootstrapplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > par2 <- as.numeric(par2) > par3 <- as.numeric(par3) > if (par1 < 10) par1 = 10 > if (par1 > 5000) par1 = 5000 > if (par2 < 3) par2 = 3 > if (par2 > length(x)) par2 = length(x) > library(modeest) This is package 'modeest' written by P. PONCET. For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'. > library(lattice) > library(boot) Attaching package: 'boot' The following object is masked from 'package:lattice': melanoma > boot.stat <- function(s) + { + s.mean <- mean(s) + s.median <- median(s) + s.midrange <- (max(s) + min(s)) / 2 + s.mode <- mlv(s,method='mfv')$M + s.kernelmode <- mlv(s, method='kernel')$M + c(s.mean, s.median, s.midrange, s.mode, s.kernelmode) + } > (r <- tsboot(x, boot.stat, R=par1, l=12, sim='fixed')) BLOCK BOOTSTRAP FOR TIME SERIES Fixed Block Length of 12 Call: tsboot(tseries = x, statistic = boot.stat, R = par1, l = 12, sim = "fixed") Bootstrap Statistics : original bias std. error t1* 162117.9 -463.2507 3462.652 t2* 163408.0 -73.2800 4095.282 t3* 159488.5 -282.4400 3087.904 t4* 162117.9 -357.6075 10841.005 t5* 166593.9 -448.7502 5726.635 > postscript(file="/var/wessaorg/rcomp/tmp/15knc1449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2utg11449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3alce1449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4x2l91449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5gb031449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/62s8m1449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/71mip1449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/8p8m91449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange') > dev.off() null device 1 > z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5]) ) > colnames(z) <- list('mean','median','midrange','mode','mode.k.dens') > postscript(file="/var/wessaorg/rcomp/tmp/94kmx1449152961.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency') Warning message: In bxp(list(stats = c(153762.027777778, 158937.333333333, 162328.625, : some notches went outside hinges ('box'): maybe set notch=FALSE > grid() > dev.off() null device 1 > if (par4 == 'P1 P5 Q1 Q3 P95 P99') { + myq.1 <- 0.01 + myq.2 <- 0.05 + myq.3 <- 0.95 + myq.4 <- 0.99 + myl.1 <- 'P1' + myl.2 <- 'P5' + myl.3 <- 'P95' + myl.4 <- 'P99' + } > if (par4 == 'P0.5 P2.5 Q1 Q3 P97.5 P99.5') { + myq.1 <- 0.005 + myq.2 <- 0.025 + myq.3 <- 0.975 + myq.4 <- 0.995 + myl.1 <- 'P0.5' + myl.2 <- 'P2.5' + myl.3 <- 'P97.5' + myl.4 <- 'P99.5' + } > if (par4 == 'P10 P20 Q1 Q3 P80 P90') { + myq.1 <- 0.10 + myq.2 <- 0.20 + myq.3 <- 0.80 + myq.4 <- 0.90 + myl.1 <- 'P10' + myl.2 <- 'P20' + myl.3 <- 'P80' + myl.4 <- 'P90' + } > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimation Results of Blocked Bootstrap',10,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'statistic',header=TRUE) > a<-table.element(a,myl.1,header=TRUE) > a<-table.element(a,myl.2,header=TRUE) > a<-table.element(a,'Q1',header=TRUE) > a<-table.element(a,'Estimate',header=TRUE) > a<-table.element(a,'Q3',header=TRUE) > a<-table.element(a,myl.3,header=TRUE) > a<-table.element(a,myl.4,header=TRUE) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,'IQR',header=TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mean',header=TRUE) > q1 <- quantile(r$t[,1],0.25)[[1]] > q3 <- quantile(r$t[,1],0.75)[[1]] > p01 <- quantile(r$t[,1],myq.1)[[1]] > p05 <- quantile(r$t[,1],myq.2)[[1]] > p95 <- quantile(r$t[,1],myq.3)[[1]] > p99 <- quantile(r$t[,1],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[1],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element( a,signif( sqrt(var(r$t[,1])),par3 ) ) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'median',header=TRUE) > q1 <- quantile(r$t[,2],0.25)[[1]] > q3 <- quantile(r$t[,2],0.75)[[1]] > p01 <- quantile(r$t[,2],myq.1)[[1]] > p05 <- quantile(r$t[,2],myq.2)[[1]] > p95 <- quantile(r$t[,2],myq.3)[[1]] > p99 <- quantile(r$t[,2],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[2],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,2])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'midrange',header=TRUE) > q1 <- quantile(r$t[,3],0.25)[[1]] > q3 <- quantile(r$t[,3],0.75)[[1]] > p01 <- quantile(r$t[,3],myq.1)[[1]] > p05 <- quantile(r$t[,3],myq.2)[[1]] > p95 <- quantile(r$t[,3],myq.3)[[1]] > p99 <- quantile(r$t[,3],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[3],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,3])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode',header=TRUE) > q1 <- quantile(r$t[,4],0.25)[[1]] > q3 <- quantile(r$t[,4],0.75)[[1]] > p01 <- quantile(r$t[,4],myq.1)[[1]] > p05 <- quantile(r$t[,4],myq.2)[[1]] > p95 <- quantile(r$t[,4],myq.3)[[1]] > p99 <- quantile(r$t[,4],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[4],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,4])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode k.dens',header=TRUE) > q1 <- quantile(r$t[,5],0.25)[[1]] > q3 <- quantile(r$t[,5],0.75)[[1]] > p01 <- quantile(r$t[,5],myq.1)[[1]] > p05 <- quantile(r$t[,5],myq.2)[[1]] > p95 <- quantile(r$t[,5],myq.3)[[1]] > p99 <- quantile(r$t[,5],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[5],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,5])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/10vl8z1449152962.tab") > > try(system("convert tmp/15knc1449152961.ps tmp/15knc1449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/2utg11449152961.ps tmp/2utg11449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/3alce1449152961.ps tmp/3alce1449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/4x2l91449152961.ps tmp/4x2l91449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/5gb031449152961.ps tmp/5gb031449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/62s8m1449152961.ps tmp/62s8m1449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/71mip1449152961.ps tmp/71mip1449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/8p8m91449152961.ps tmp/8p8m91449152961.png",intern=TRUE)) character(0) > try(system("convert tmp/94kmx1449152961.ps tmp/94kmx1449152961.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 4.216 0.658 4.911