R version 3.0.2 (2013-09-25) -- "Frisbee Sailing" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(8.09,8.18,8.26,8.28,8.28,8.28,8.29,8.3,8.3,8.31,8.33,8.33,8.34,8.48,8.59,8.67,8.67,8.67,8.71,8.72,8.72,8.72,8.74,8.74,8.74,8.74,8.79,8.85,8.86,8.87,8.92,8.96,8.97,8.99,8.98,8.98,9.01,9.01,9.03,9.05,9.05,9.05,9.13,9.13,9.13,9.14,9.16,9.16,9.16,9.16,9.22,9.22,9.25,9.25,9.26,9.26,9.29,9.28,9.37,9.41,9.41,9.45,9.49,9.49,9.56,9.54,9.55,9.55,9.57,9.57,9.58,9.59,9.59,9.59,9.61,9.61,9.62,9.62,9.63,9.65,9.65,9.68,9.73,9.73,9.73,9.74,9.68,9.68,9.74,9.74,9.76,9.78,9.79,9.81,9.84,9.84) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 96 > (np <- floor(n / par1)) [1] 8 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 8.09 8.34 8.74 9.01 9.16 9.41 9.59 9.73 [2,] 8.18 8.48 8.74 9.01 9.16 9.45 9.59 9.74 [3,] 8.26 8.59 8.79 9.03 9.22 9.49 9.61 9.68 [4,] 8.28 8.67 8.85 9.05 9.22 9.49 9.61 9.68 [5,] 8.28 8.67 8.86 9.05 9.25 9.56 9.62 9.74 [6,] 8.28 8.67 8.87 9.05 9.25 9.54 9.62 9.74 [7,] 8.29 8.71 8.92 9.13 9.26 9.55 9.63 9.76 [8,] 8.30 8.72 8.96 9.13 9.26 9.55 9.65 9.78 [9,] 8.30 8.72 8.97 9.13 9.29 9.57 9.65 9.79 [10,] 8.31 8.72 8.99 9.14 9.28 9.57 9.68 9.81 [11,] 8.33 8.74 8.98 9.16 9.37 9.58 9.73 9.84 [12,] 8.33 8.74 8.98 9.16 9.41 9.59 9.73 9.84 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 8.269167 8.647500 8.887500 9.087500 9.260833 9.529167 9.642500 9.760833 > arr.sd [1] 0.06868351 0.12218652 0.09352929 0.05894913 0.07341765 0.05648143 0.04826536 [8] 0.05350588 > arr.range [1] 0.24 0.40 0.25 0.15 0.25 0.18 0.14 0.16 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean 0.34459 -0.02985 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) 5.236 -3.580 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean 1.1943 -0.1065 > postscript(file="/var/wessaorg/rcomp/tmp/1jz7l1426069078.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2rn9x1426069078.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3gsom1426069078.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4xldr1426069078.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/57qaf1426069078.tab") > > try(system("convert tmp/1jz7l1426069078.ps tmp/1jz7l1426069078.png",intern=TRUE)) character(0) > try(system("convert tmp/2rn9x1426069078.ps tmp/2rn9x1426069078.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.892 0.192 1.093