R version 3.0.2 (2013-09-25) -- "Frisbee Sailing" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(101.94,102.62,102.71,103.39,104.51,104.09,104.29,104.57,105.39,105.15,106.13,105.46,106.47,106.62,106.52,108.04,107.15,107.32,107.76,107.26,107.89,109.08,110.4,111.03,112.05,112.28,112.8,114.17,114.92,114.65,115.49,114.67,114.71,115.15,115.03,115.07,116.46,116.37,116.2,116.5,116.38,115.44,114.96,114.48,114.3,114.66,114.97,114.79,116.16,116.52,117.14,117.27,117.58,117.21,117.08,117.06,117.55,117.61,117.74,117.87,118.59,119.09,118.93,119.62,120.09,120.38,120.49,120.02,120.17,120.58,121.54,121.51,121.81,122.85,122.97,122.96,123.4,123.23,123.24,123.72,123.99,125.1,125.4,125.35,126.37,127.17,127.66,128.48,129.21,129.48,128.63,128.16,128.1,128.08,128.14,128.19) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 96 > (np <- floor(n / par1)) [1] 8 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 101.94 106.47 112.05 116.46 116.16 118.59 121.81 126.37 [2,] 102.62 106.62 112.28 116.37 116.52 119.09 122.85 127.17 [3,] 102.71 106.52 112.80 116.20 117.14 118.93 122.97 127.66 [4,] 103.39 108.04 114.17 116.50 117.27 119.62 122.96 128.48 [5,] 104.51 107.15 114.92 116.38 117.58 120.09 123.40 129.21 [6,] 104.09 107.32 114.65 115.44 117.21 120.38 123.23 129.48 [7,] 104.29 107.76 115.49 114.96 117.08 120.49 123.24 128.63 [8,] 104.57 107.26 114.67 114.48 117.06 120.02 123.72 128.16 [9,] 105.39 107.89 114.71 114.30 117.55 120.17 123.99 128.10 [10,] 105.15 109.08 115.15 114.66 117.61 120.58 125.10 128.08 [11,] 106.13 110.40 115.03 114.97 117.74 121.54 125.40 128.14 [12,] 105.46 111.03 115.07 114.79 117.87 121.51 125.35 128.19 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 104.1875 107.9617 114.2492 115.4592 117.2325 120.0842 123.6683 128.1392 > arr.sd [1] 1.2920254 1.4871928 1.1853305 0.8628226 0.4999477 0.9259144 1.1095686 [8] 0.8316737 > arr.range [1] 4.19 4.56 3.44 2.20 1.71 2.95 3.59 3.11 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean 3.67471 -0.02278 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) 11.684 -2.462 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean 9.5732 -0.0546 > postscript(file="/var/wessaorg/rcomp/tmp/1k5a71426195516.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2kxk61426195516.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/34lvh1426195516.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/42txf1426195516.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/528ek1426195516.tab") > > try(system("convert tmp/1k5a71426195516.ps tmp/1k5a71426195516.png",intern=TRUE)) character(0) > try(system("convert tmp/2kxk61426195516.ps tmp/2kxk61426195516.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.886 0.152 1.044