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Type 'q()' to quit R. > x <- array(list(0.00,0.33,0.33,0.66,0.66,0.66,0.66,0.66,0.66,0.66,0.66,0.66,0.66,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.00,0.00,0.33,0.00,0.00,0.00,0.00,0.00,0.00,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.33,0.66,0.66,0.66,1.00),dim=c(1,51),dimnames=list(c('ESTRUCTURALES'),1:51)) > y <- array(NA,dim=c(1,51),dimnames=list(c('ESTRUCTURALES'),1:51)) > for (i in 1:dim(x)[1]) + { + for (j in 1:dim(x)[2]) + { + y[i,j] <- as.numeric(x[i,j]) + } + } > par4 = 'FALSE' > par3 = 'FALSE' > par2 = '20' > par1 = 'ward' > ylab = 'height' > xlab = 'cases' > main = 'ATRUBUTOS ESTRUCTURALES' > par4 <- 'FALSE' > par3 <- 'FALSE' > par2 <- '20' > par1 <- 'ward' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa, P., (2012), Hierarchical Clustering (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par3 <- as.logical(par3) > par4 <- as.logical(par4) > if (par3 == 'TRUE'){ + dum = xlab + xlab = ylab + ylab = dum + } > x <- t(y) > hc <- hclust(dist(x),method=par1) The "ward" method has been renamed to "ward.D"; note new "ward.D2" > d <- as.dendrogram(hc) > str(d) --[dendrogram w/ 2 branches and 51 members at h = 7.14] |--[dendrogram w/ 2 branches and 14 members at h = 0.631] | |--leaf "51" | `--[dendrogram w/ 2 branches and 13 members at h = 0] | |--leaf "50" | `--[dendrogram w/ 2 branches and 12 members at h = 0] | |--leaf "49" | `--[dendrogram w/ 2 branches and 11 members at h = 0] | |--leaf "48" | `--[dendrogram w/ 2 branches and 10 members at h = 0] | |--leaf "13" | `--[dendrogram w/ 2 branches and 9 members at h = 0] | |--leaf "12" | `--[dendrogram w/ 2 branches and 8 members at h = 0] | |--leaf "11" | `--[dendrogram w/ 2 branches and 7 members at h = 0] | |--leaf "10" | `--[dendrogram w/ 2 branches and 6 members at h = 0] | |--leaf "9" | `--[dendrogram w/ 2 branches and 5 members at h = 0] | |--leaf "8" | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf "7" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "6" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "4" | `--leaf "5" `--[dendrogram w/ 2 branches and 37 members at h = 4.5] |--[dendrogram w/ 2 branches and 9 members at h = 0] | |--leaf "30" | `--[dendrogram w/ 2 branches and 8 members at h = 0] | |--leaf "29" | `--[dendrogram w/ 2 branches and 7 members at h = 0] | |--leaf "28" | `--[dendrogram w/ 2 branches and 6 members at h = 0] | |--leaf "27" | `--[dendrogram w/ 2 branches and 5 members at h = 0] | |--leaf "26" | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf "25" | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf "23" | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf "1" | `--leaf "22" `--[dendrogram w/ 2 branches and 28 members at h = 0] |--leaf "47" `--[dendrogram w/ 2 branches and 27 members at h = 0] |--leaf "46" `--[dendrogram w/ 2 branches and 26 members at h = 0] |--leaf "45" `--[dendrogram w/ 2 branches and 25 members at h = 0] |--leaf "44" `--[dendrogram w/ 2 branches and 24 members at h = 0] |--leaf "43" `--[dendrogram w/ 2 branches and 23 members at h = 0] |--leaf "42" `--[dendrogram w/ 2 branches and 22 members at h = 0] |--leaf "41" `--[dendrogram w/ 2 branches and 21 members at h = 0] |--leaf "40" `--[dendrogram w/ 2 branches and 20 members at h = 0] |--leaf "39" `--[dendrogram w/ 2 branches and 19 members at h = 0] |--leaf "38" `--[dendrogram w/ 2 branches and 18 members at h = 0] |--leaf "37" `--[dendrogram w/ 2 branches and 17 members at h = 0] |--leaf "36" `--[dendrogram w/ 2 branches and 16 members at h = 0] |--leaf "35" `--[dendrogram w/ 2 branches and 15 members at h = 0] |--leaf "34" `--[dendrogram w/ 2 branches and 14 members at h = 0] |--leaf "33" `--[dendrogram w/ 2 branches and 13 members at h = 0] |--leaf "32" `--[dendrogram w/ 2 branches and 12 members at h = 0] |--leaf "31" `--[dendrogram w/ 2 branches and 11 members at h = 0] |--leaf "24" `--[dendrogram w/ 2 branches and 10 members at h = 0] |--leaf "21" `--[dendrogram w/ 2 branches and 9 members at h = 0] |--leaf "20" `--[dendrogram w/ 2 branches and 8 members at h = 0] |--leaf "19" `--[dendrogram w/ 2 branches and 7 members at h = 0] |--leaf "18" `--[dendrogram w/ 2 branches and 6 members at h = 0] |--leaf "17" `--[dendrogram w/ 2 branches and 5 members at h = 0] |--leaf "16" `--[dendrogram w/ 2 branches and 4 members at h = 0] |--leaf "15" `--[dendrogram w/ 2 branches and 3 members at h = 0] |--leaf "14" `--[dendrogram w/ 2 branches and 2 members at h = 0] |--leaf "2" `--leaf "3" > mysub <- paste('Method: ',par1) > postscript(file="/var/wessaorg/rcomp/tmp/1f6au1447693668.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=13.888888888889,height=13.888888888889) > if (par4 == 'TRUE'){ + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } > dev.off() null device 1 > if (par2 != 'ALL'){ + if (par3 == 'TRUE'){ + ylab = 'cluster' + } else { + xlab = 'cluster' + } + par2 <- as.numeric(par2) + memb <- cutree(hc, k = par2) + cent <- NULL + for(k in 1:par2){ + cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) + } + hc1 <- hclust(dist(cent),method=par1, members = table(memb)) + de <- as.dendrogram(hc1) + postscript(file="/var/wessaorg/rcomp/tmp/25eli1447693668.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=13.888888888889,height=13.888888888889) + if (par4 == 'TRUE'){ + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) + } else { + plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) + } + dev.off() + str(de) + } The "ward" method has been renamed to "ward.D"; note new "ward.D2" --[dendrogram w/ 2 branches and 20 members at h = 4.45] |--[dendrogram w/ 2 branches and 14 members at h = 0.631] | |--leaf 20 | `--[dendrogram w/ 2 branches and 13 members at h = 0] | |--leaf 19 | `--[dendrogram w/ 2 branches and 12 members at h = 0] | |--leaf 18 | `--[dendrogram w/ 2 branches and 11 members at h = 0] | |--leaf 17 | `--[dendrogram w/ 2 branches and 10 members at h = 0] | |--leaf 12 | `--[dendrogram w/ 2 branches and 9 members at h = 0] | |--leaf 11 | `--[dendrogram w/ 2 branches and 8 members at h = 0] | |--leaf 10 | `--[dendrogram w/ 2 branches and 7 members at h = 0] | |--leaf 9 | `--[dendrogram w/ 2 branches and 6 members at h = 0] | |--leaf 8 | `--[dendrogram w/ 2 branches and 5 members at h = 0] | |--leaf 7 | `--[dendrogram w/ 2 branches and 4 members at h = 0] | |--leaf 6 | `--[dendrogram w/ 2 branches and 3 members at h = 0] | |--leaf 5 | `--[dendrogram w/ 2 branches and 2 members at h = 0] | |--leaf 3 | `--leaf 4 `--[dendrogram w/ 2 branches and 6 members at h = 0.651] |--leaf 1 `--[dendrogram w/ 2 branches and 5 members at h = 0] |--leaf 16 `--[dendrogram w/ 2 branches and 4 members at h = 0] |--leaf 15 `--[dendrogram w/ 2 branches and 3 members at h = 0] |--leaf 14 `--[dendrogram w/ 2 branches and 2 members at h = 0] |--leaf 2 `--leaf 13 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Summary of Dendrogram',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Label',header=TRUE) > a<-table.element(a,'Height',header=TRUE) > a<-table.row.end(a) > num <- length(x[,1])-1 > for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,hc$labels[i]) + a<-table.element(a,hc$height[i]) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3hojf1447693668.tab") > if (par2 != 'ALL'){ + a<-table.start() + a<-table.row.start(a) + a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) + a<-table.row.end(a) + a<-table.row.start(a) + a<-table.element(a,'Label',header=TRUE) + a<-table.element(a,'Height',header=TRUE) + a<-table.row.end(a) + num <- par2-1 + for (i in 1:num) + { + a<-table.row.start(a) + a<-table.element(a,i) + a<-table.element(a,hc1$height[i]) + a<-table.row.end(a) + } + a<-table.end(a) + table.save(a,file="/var/wessaorg/rcomp/tmp/47fwf1447693668.tab") + } > > try(system("convert tmp/1f6au1447693668.ps tmp/1f6au1447693668.png",intern=TRUE)) character(0) > try(system("convert tmp/25eli1447693668.ps tmp/25eli1447693668.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 1.532 0.205 1.741