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Type 'q()' to quit R. > x <- c(24158,24359,24628,25021,25315,25481,26043,26207,26466,26276,26236,26211,26265,25996,25794,25752,25491,25092,25759,25624,25138,25042,25014,25244,25493,25269,25170,25332,24966,24851,25518,25403,25028,24895,24905,25317,25718,25822,25967,25907,25940,26247,26900,26980,26677,26701,26808,27469,27586,27567,27508,27444,27380,27500,28217,28355,27627,27565,27496,27453,27705,27462,27152,27016,26836,26722,27391,27139,26644,26455,26294,26437,26954,26620,26307,26003,25798,25603,26242,26051,25658,25489,25425,25183,24774,24977,24980,25081,25240,25419,26309,26600,26690,26889,27109,27646,28330,28332,28202,28163,28077,28351,28950,28972,28812,28979,29112,29139) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 108 > (np <- floor(n / par1)) [1] 9 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [1,] 24158 26265 25493 25718 27586 27705 26954 24774 28330 [2,] 24359 25996 25269 25822 27567 27462 26620 24977 28332 [3,] 24628 25794 25170 25967 27508 27152 26307 24980 28202 [4,] 25021 25752 25332 25907 27444 27016 26003 25081 28163 [5,] 25315 25491 24966 25940 27380 26836 25798 25240 28077 [6,] 25481 25092 24851 26247 27500 26722 25603 25419 28351 [7,] 26043 25759 25518 26900 28217 27391 26242 26309 28950 [8,] 26207 25624 25403 26980 28355 27139 26051 26600 28972 [9,] 26466 25138 25028 26677 27627 26644 25658 26690 28812 [10,] 26276 25042 24895 26701 27565 26455 25489 26889 28979 [11,] 26236 25014 24905 26808 27496 26294 25425 27109 29112 [12,] 26211 25244 25317 27469 27453 26437 25183 27646 29139 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 25533.42 25517.58 25178.92 26428.00 27641.50 26937.75 25944.42 25976.17 [9] 28618.25 > arr.sd [1] 825.2329 412.2017 242.3020 565.5490 309.9723 447.5058 521.1418 [8] 1000.1822 407.6278 > arr.range [1] 2308 1251 667 1751 975 1411 1771 2872 1062 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean 2042.48121 -0.05741 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) 26.651 -2.011 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean 6358.8413 -0.1815 > postscript(file="/var/wessaorg/rcomp/tmp/1ocfa1447864461.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2u2wx1447864461.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3q5tr1447864461.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4qjv11447864461.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/5d9i61447864461.tab") > > try(system("convert tmp/1ocfa1447864461.ps tmp/1ocfa1447864461.png",intern=TRUE)) character(0) > try(system("convert tmp/2u2wx1447864461.ps tmp/2u2wx1447864461.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.912 0.176 1.091