R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'q()' to quit R.

> x <- array(list(0.33
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+ ,dim=c(51
+ ,16)
+ ,dimnames=list(c('1'
+ ,'2'
+ ,'3'
+ ,'4'
+ ,'5'
+ ,'6'
+ ,'7'
+ ,'8'
+ ,'9'
+ ,'10'
+ ,'11'
+ ,'12'
+ ,'13'
+ ,'14'
+ ,'15'
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+ ,'17'
+ ,'18'
+ ,'19'
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+ ,'25'
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+ ,'30'
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+ ,'45'
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+ ,'48'
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+ ,'50'
+ ,'51')
+ ,1:16))
>  y <- array(NA,dim=c(51,16),dimnames=list(c('1','2','3','4','5','6','7','8','9','10','11','12','13','14','15','16','17','18','19','20','21','22','23','24','25','26','27','28','29','30','31','32','33','34','35','36','37','38','39','40','41','42','43','44','45','46','47','48','49','50','51'),1:16))
>  for (i in 1:dim(x)[1])
+  {
+  	for (j in 1:dim(x)[2])
+  	{
+  		y[i,j] <- as.numeric(x[i,j])
+  	}
+  }
> par4 = 'FALSE'
> par3 = 'FALSE'
> par2 = '15'
> par1 = 'ward'
> ylab = 'height'
> xlab = 'cases'
> main = 'Dendrogram'
> par4 <- 'FALSE'
> par3 <- 'FALSE'
> par2 <- '15'
> par1 <- 'ward'
> #'GNU S' R Code compiled by R2WASP v. 1.2.291 ()
> #Author: root
> #To cite this work: Wessa, P., (2012), Hierarchical Clustering (v1.0.3) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_hierarchicalclustering.wasp/
> #Source of accompanying publication: Office for Research, Development, and Education
> #
> par3 <- as.logical(par3)
> par4 <- as.logical(par4)
> if (par3 == 'TRUE'){
+ dum = xlab
+ xlab = ylab
+ ylab = dum
+ }
> x <- t(y)
> hc <- hclust(dist(x),method=par1)
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
> d <- as.dendrogram(hc)
> str(d)
--[dendrogram w/ 2 branches and 16 members at h = 8.13]
  |--[dendrogram w/ 2 branches and 2 members at h = 1.99]
  |  |--leaf "10" 
  |  `--leaf "13" 
  `--[dendrogram w/ 2 branches and 14 members at h = 4.89]
     |--[dendrogram w/ 2 branches and 3 members at h = 1.84]
     |  |--leaf "14" 
     |  `--[dendrogram w/ 2 branches and 2 members at h = 1.58]
     |     |--leaf "11" 
     |     `--leaf "12" 
     `--[dendrogram w/ 2 branches and 11 members at h = 3.22]
        |--[dendrogram w/ 2 branches and 9 members at h = 2.4]
        |  |--[dendrogram w/ 2 branches and 2 members at h = 1.36]
        |  |  |--leaf "4" 
        |  |  `--leaf "5" 
        |  `--[dendrogram w/ 2 branches and 7 members at h = 2.28]
        |     |--leaf "16" 
        |     `--[dendrogram w/ 2 branches and 6 members at h = 1.93]
        |        |--[dendrogram w/ 2 branches and 3 members at h = 1.68]
        |        |  |--leaf "1" 
        |        |  `--[dendrogram w/ 2 branches and 2 members at h = 1.4]
        |        |     |--leaf "6" 
        |        |     `--leaf "15" 
        |        `--[dendrogram w/ 2 branches and 3 members at h = 1.83]
        |           |--leaf "3" 
        |           `--[dendrogram w/ 2 branches and 2 members at h = 1.22]
        |              |--leaf "7" 
        |              `--leaf "8" 
        `--[dendrogram w/ 2 branches and 2 members at h = 2.6]
           |--leaf "2" 
           `--leaf "9" 
> mysub <- paste('Method: ',par1)
> postscript(file="/var/wessaorg/rcomp/tmp/113dr1447954623.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
> if (par4 == 'TRUE'){
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
> dev.off()
null device 
          1 
> if (par2 != 'ALL'){
+ if (par3 == 'TRUE'){
+ ylab = 'cluster'
+ } else {
+ xlab = 'cluster'
+ }
+ par2 <- as.numeric(par2)
+ memb <- cutree(hc, k = par2)
+ cent <- NULL
+ for(k in 1:par2){
+ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
+ }
+ hc1 <- hclust(dist(cent),method=par1, members = table(memb))
+ de <- as.dendrogram(hc1)
+ postscript(file="/var/wessaorg/rcomp/tmp/2lmi71447954623.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
+ if (par4 == 'TRUE'){
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
+ } else {
+ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
+ }
+ dev.off()
+ str(de)
+ }
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
--[dendrogram w/ 2 branches and 15 members at h = 7.92]
  |--[dendrogram w/ 2 branches and 2 members at h = 1.99]
  |  |--leaf 9 
  |  `--leaf 12 
  `--[dendrogram w/ 2 branches and 13 members at h = 4.79]
     |--[dendrogram w/ 2 branches and 3 members at h = 1.84]
     |  |--leaf 13 
     |  `--[dendrogram w/ 2 branches and 2 members at h = 1.58]
     |     |--leaf 10 
     |     `--leaf 11 
     `--[dendrogram w/ 2 branches and 10 members at h = 3.15]
        |--[dendrogram w/ 2 branches and 8 members at h = 2.33]
        |  |--[dendrogram w/ 2 branches and 2 members at h = 1.36]
        |  |  |--leaf 4 
        |  |  `--leaf 5 
        |  `--[dendrogram w/ 2 branches and 6 members at h = 2.19]
        |     |--leaf 15 
        |     `--[dendrogram w/ 2 branches and 5 members at h = 1.82]
        |        |--leaf 3 
        |        `--[dendrogram w/ 2 branches and 4 members at h = 1.68]
        |           |--leaf 1 
        |           `--[dendrogram w/ 2 branches and 3 members at h = 1.52]
        |              |--leaf 14 
        |              `--[dendrogram w/ 2 branches and 2 members at h = 1.32]
        |                 |--leaf 6 
        |                 `--leaf 7 
        `--[dendrogram w/ 2 branches and 2 members at h = 2.6]
           |--leaf 2 
           `--leaf 8 
> 
> #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab
> load(file="/var/wessaorg/rcomp/createtable")
> 
> a<-table.start()
> a<-table.row.start(a)
> a<-table.element(a,'Summary of Dendrogram',2,TRUE)
> a<-table.row.end(a)
> a<-table.row.start(a)
> a<-table.element(a,'Label',header=TRUE)
> a<-table.element(a,'Height',header=TRUE)
> a<-table.row.end(a)
> num <- length(x[,1])-1
> for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,hc$labels[i])
+ a<-table.element(a,hc$height[i])
+ a<-table.row.end(a)
+ }
> a<-table.end(a)
> table.save(a,file="/var/wessaorg/rcomp/tmp/3o4pm1447954623.tab") 
> if (par2 != 'ALL'){
+ a<-table.start()
+ a<-table.row.start(a)
+ a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
+ a<-table.row.end(a)
+ a<-table.row.start(a)
+ a<-table.element(a,'Label',header=TRUE)
+ a<-table.element(a,'Height',header=TRUE)
+ a<-table.row.end(a)
+ num <- par2-1
+ for (i in 1:num)
+ {
+ a<-table.row.start(a)
+ a<-table.element(a,i)
+ a<-table.element(a,hc1$height[i])
+ a<-table.row.end(a)
+ }
+ a<-table.end(a)
+ table.save(a,file="/var/wessaorg/rcomp/tmp/4kla21447954623.tab") 
+ }
> 
> try(system("convert tmp/113dr1447954623.ps tmp/113dr1447954623.png",intern=TRUE))
character(0)
> try(system("convert tmp/2lmi71447954623.ps tmp/2lmi71447954623.png",intern=TRUE))
character(0)
> 
> 
> proc.time()
   user  system elapsed 
  1.035   0.179   1.216