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Type 'q()' to quit R. > x <- c(2754542,2899512,2928886,3011252,2932895,3069307,2863923,2585491,2993900,3023542,2491370,2341705,2126472,2196705,2368313,2285174,2163877,2299241,2275643,2163091,2416149,2434553,2281937,2440464,2255745,2389872,2863148,2623516,2558136,2898129,2537720,2543469,2779739,2884779,2711624,2817771,2884477,3058996,3285298,2879617,3220416,3144280,2940811,2986507,3153720,2995806,2990242,2879837,2848699,3138385,3532447,3121872,3309250,3215022,2966778,3010284,3083824,3257727,3180374,3036414,2966714,3067677,3339789,3299861,3193328,3181266,3193356,2898282,2929524,3217311,3126249,3131083,3008058,2868318,3207495,3109336,3070725,2989963,3287552,2835238,3368961,3291689,3008536,2974109) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P. (2012), Standard Deviation-Mean Plot (v1.0.6) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_smp.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 84 > (np <- floor(n / par1)) [1] 7 > arr <- array(NA,dim=c(par1,np)) > j <- 0 > k <- 1 > for (i in 1:(np*par1)) + { + j = j + 1 + arr[j,k] <- x[i] + if (j == par1) { + j = 0 + k=k+1 + } + } > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 2754542 2126472 2255745 2884477 2848699 2966714 3008058 [2,] 2899512 2196705 2389872 3058996 3138385 3067677 2868318 [3,] 2928886 2368313 2863148 3285298 3532447 3339789 3207495 [4,] 3011252 2285174 2623516 2879617 3121872 3299861 3109336 [5,] 2932895 2163877 2558136 3220416 3309250 3193328 3070725 [6,] 3069307 2299241 2898129 3144280 3215022 3181266 2989963 [7,] 2863923 2275643 2537720 2940811 2966778 3193356 3287552 [8,] 2585491 2163091 2543469 2986507 3010284 2898282 2835238 [9,] 2993900 2416149 2779739 3153720 3083824 2929524 3368961 [10,] 3023542 2434553 2884779 2995806 3257727 3217311 3291689 [11,] 2491370 2281937 2711624 2990242 3180374 3126249 3008536 [12,] 2341705 2440464 2817771 2879837 3036414 3131083 2974109 > arr.mean <- array(NA,dim=np) > arr.sd <- array(NA,dim=np) > arr.range <- array(NA,dim=np) > for (j in 1:np) + { + arr.mean[j] <- mean(arr[,j],na.rm=TRUE) + arr.sd[j] <- sd(arr[,j],na.rm=TRUE) + arr.range[j] <- max(arr[,j],na.rm=TRUE) - min(arr[,j],na.rm=TRUE) + } > arr.mean [1] 2824694 2287635 2655304 3035001 3141756 3128703 3084998 > arr.sd [1] 233361.5 110104.3 205992.1 137932.7 178286.4 139988.8 171254.8 > arr.range [1] 727602 313992 642384 405681 683748 441507 533723 > (lm1 <- lm(arr.sd~arr.mean)) Call: lm(formula = arr.sd ~ arr.mean) Coefficients: (Intercept) arr.mean 1.016e+05 2.310e-02 > (lnlm1 <- lm(log(arr.sd)~log(arr.mean))) Call: lm(formula = log(arr.sd) ~ log(arr.mean)) Coefficients: (Intercept) log(arr.mean) 2.1165 0.6651 > (lm2 <- lm(arr.range~arr.mean)) Call: lm(formula = arr.range ~ arr.mean) Coefficients: (Intercept) arr.mean 9.692e+04 1.523e-01 > postscript(file="/var/wessaorg/rcomp/tmp/1ri1r1447958511.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.sd,main='Standard Deviation-Mean Plot',xlab='mean',ylab='standard deviation') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/21xfr1447958511.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.mean,arr.range,main='Range-Mean Plot',xlab='mean',ylab='range') > dev.off() null device 1 > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Standard Deviation-Mean Plot',4,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Section',header=TRUE) > a<-table.element(a,'Mean',header=TRUE) > a<-table.element(a,'Standard Deviation',header=TRUE) > a<-table.element(a,'Range',header=TRUE) > a<-table.row.end(a) > for (j in 1:np) { + a<-table.row.start(a) + a<-table.element(a,j,header=TRUE) + a<-table.element(a,arr.mean[j]) + a<-table.element(a,arr.sd[j] ) + a<-table.element(a,arr.range[j] ) + a<-table.row.end(a) + } > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/3ak7k1447958511.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: S.E.(k) = alpha + beta * Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/4uela1447958511.tab") > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Regression: ln S.E.(k) = alpha + beta * ln Mean(k)',2,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'alpha',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[1]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'beta',header=TRUE) > a<-table.element(a,lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,2]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'T-STAT',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,3]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'p-value',header=TRUE) > a<-table.element(a,summary(lnlm1)$coefficients[2,4]) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'Lambda',header=TRUE) > a<-table.element(a,1-lnlm1$coefficients[[2]]) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/5irco1447958511.tab") > > try(system("convert tmp/1ri1r1447958511.ps tmp/1ri1r1447958511.png",intern=TRUE)) character(0) > try(system("convert tmp/21xfr1447958511.ps tmp/21xfr1447958511.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 0.832 0.146 0.985