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Type 'q()' to quit R. > x <- c(89.65,90.65,89.34,89.15,88.82,88.82,91.97,93.01,93.24,93.2,93.19,92.2,93.39,94.75,94.25,94.37,94.02,92.77,92.64,93.19,92.74,92.52,92.25,91.6,93.73,96.21,96.36,95.69,95.07,95.5,95.22,97.41,98.31,98.54,98.45,98.03,101.45,102.44,102.42,100.98,100.69,100.28,98.06,97.37,97.25,98.93,100.04,100.09,100.79,99.76,99.63,99.26,99.69,99.17,98.79,97.97,98.1,97.91,97.16,96.8,97.46,96.59,96.35,96.12,96.16,95.95,96.06,95.89,95.9,95.82,95.54,95.51) > par4 = 'P1 P5 Q1 Q3 P95 P99' > par3 = '5' > par2 = '12' > par1 = '50' > par4 <- 'P1 P5 Q1 Q3 P95 P99' > par3 <- '5' > par2 <- '12' > par1 <- '50' > #'GNU S' R Code compiled by R2WASP v. 1.2.327 (Mon, 05 Oct 2015 17:06:50 +0100) > #Author: root > #To cite this work: Wessa P., (2015), Blocked Bootstrap Plot for Central Tendency (v1.0.5) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_bootstrapplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > par2 <- as.numeric(par2) > par3 <- as.numeric(par3) > if (par1 < 10) par1 = 10 > if (par1 > 5000) par1 = 5000 > if (par2 < 3) par2 = 3 > if (par2 > length(x)) par2 = length(x) > library(modeest) This is package 'modeest' written by P. PONCET. For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'. > library(lattice) > library(boot) Attaching package: 'boot' The following object is masked from 'package:lattice': melanoma > boot.stat <- function(s) + { + s.mean <- mean(s) + s.median <- median(s) + s.midrange <- (max(s) + min(s)) / 2 + s.mode <- mlv(s,method='mfv')$M + s.kernelmode <- mlv(s, method='kernel')$M + c(s.mean, s.median, s.midrange, s.mode, s.kernelmode) + } > (r <- tsboot(x, boot.stat, R=par1, l=12, sim='fixed')) BLOCK BOOTSTRAP FOR TIME SERIES Fixed Block Length of 12 Call: tsboot(tseries = x, statistic = boot.stat, R = par1, l = 12, sim = "fixed") Bootstrap Statistics : original bias std. error t1* 95.95319 -0.4414694 1.1241315 t2* 96.09000 -0.5274000 1.5011860 t3* 95.63000 -0.3032000 0.9019383 t4* 91.00500 2.9649070 3.4324776 t5* 96.54287 -1.1486675 2.6099542 > postscript(file="/var/wessaorg/rcomp/tmp/180pc1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2dgzd1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3q2oe1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4mku01462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/54cyo1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density') > grid() > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6tz521462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/7t78z1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median') > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/80p1d1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange') > dev.off() null device 1 > z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5]) ) > colnames(z) <- list('mean','median','midrange','mode','mode.k.dens') > postscript(file="/var/wessaorg/rcomp/tmp/9dtnl1462030139.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency') Warning message: In bxp(list(stats = c(93.4972222222222, 94.6201388888889, 95.5280555555556, : some notches went outside hinges ('box'): maybe set notch=FALSE > grid() > dev.off() null device 1 > if (par4 == 'P1 P5 Q1 Q3 P95 P99') { + myq.1 <- 0.01 + myq.2 <- 0.05 + myq.3 <- 0.95 + myq.4 <- 0.99 + myl.1 <- 'P1' + myl.2 <- 'P5' + myl.3 <- 'P95' + myl.4 <- 'P99' + } > if (par4 == 'P0.5 P2.5 Q1 Q3 P97.5 P99.5') { + myq.1 <- 0.005 + myq.2 <- 0.025 + myq.3 <- 0.975 + myq.4 <- 0.995 + myl.1 <- 'P0.5' + myl.2 <- 'P2.5' + myl.3 <- 'P97.5' + myl.4 <- 'P99.5' + } > if (par4 == 'P10 P20 Q1 Q3 P80 P90') { + myq.1 <- 0.10 + myq.2 <- 0.20 + myq.3 <- 0.80 + myq.4 <- 0.90 + myl.1 <- 'P10' + myl.2 <- 'P20' + myl.3 <- 'P80' + myl.4 <- 'P90' + } > > #Note: the /var/wessaorg/rcomp/createtable file can be downloaded at http://www.wessa.net/cretab > load(file="/var/wessaorg/rcomp/createtable") > > a<-table.start() > a<-table.row.start(a) > a<-table.element(a,'Estimation Results of Blocked Bootstrap',10,TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'statistic',header=TRUE) > a<-table.element(a,myl.1,header=TRUE) > a<-table.element(a,myl.2,header=TRUE) > a<-table.element(a,'Q1',header=TRUE) > a<-table.element(a,'Estimate',header=TRUE) > a<-table.element(a,'Q3',header=TRUE) > a<-table.element(a,myl.3,header=TRUE) > a<-table.element(a,myl.4,header=TRUE) > a<-table.element(a,'S.D.',header=TRUE) > a<-table.element(a,'IQR',header=TRUE) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mean',header=TRUE) > q1 <- quantile(r$t[,1],0.25)[[1]] > q3 <- quantile(r$t[,1],0.75)[[1]] > p01 <- quantile(r$t[,1],myq.1)[[1]] > p05 <- quantile(r$t[,1],myq.2)[[1]] > p95 <- quantile(r$t[,1],myq.3)[[1]] > p99 <- quantile(r$t[,1],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[1],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element( a,signif( sqrt(var(r$t[,1])),par3 ) ) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'median',header=TRUE) > q1 <- quantile(r$t[,2],0.25)[[1]] > q3 <- quantile(r$t[,2],0.75)[[1]] > p01 <- quantile(r$t[,2],myq.1)[[1]] > p05 <- quantile(r$t[,2],myq.2)[[1]] > p95 <- quantile(r$t[,2],myq.3)[[1]] > p99 <- quantile(r$t[,2],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[2],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,2])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'midrange',header=TRUE) > q1 <- quantile(r$t[,3],0.25)[[1]] > q3 <- quantile(r$t[,3],0.75)[[1]] > p01 <- quantile(r$t[,3],myq.1)[[1]] > p05 <- quantile(r$t[,3],myq.2)[[1]] > p95 <- quantile(r$t[,3],myq.3)[[1]] > p99 <- quantile(r$t[,3],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[3],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,3])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode',header=TRUE) > q1 <- quantile(r$t[,4],0.25)[[1]] > q3 <- quantile(r$t[,4],0.75)[[1]] > p01 <- quantile(r$t[,4],myq.1)[[1]] > p05 <- quantile(r$t[,4],myq.2)[[1]] > p95 <- quantile(r$t[,4],myq.3)[[1]] > p99 <- quantile(r$t[,4],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[4],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,4])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.row.start(a) > a<-table.element(a,'mode k.dens',header=TRUE) > q1 <- quantile(r$t[,5],0.25)[[1]] > q3 <- quantile(r$t[,5],0.75)[[1]] > p01 <- quantile(r$t[,5],myq.1)[[1]] > p05 <- quantile(r$t[,5],myq.2)[[1]] > p95 <- quantile(r$t[,5],myq.3)[[1]] > p99 <- quantile(r$t[,5],myq.4)[[1]] > a<-table.element(a,signif(p01,par3)) > a<-table.element(a,signif(p05,par3)) > a<-table.element(a,signif(q1,par3)) > a<-table.element(a,signif(r$t0[5],par3)) > a<-table.element(a,signif(q3,par3)) > a<-table.element(a,signif(p95,par3)) > a<-table.element(a,signif(p99,par3)) > a<-table.element(a,signif(sqrt(var(r$t[,5])),par3)) > a<-table.element(a,signif(q3-q1,par3)) > a<-table.row.end(a) > a<-table.end(a) > table.save(a,file="/var/wessaorg/rcomp/tmp/10ro901462030139.tab") > > try(system("convert tmp/180pc1462030139.ps tmp/180pc1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/2dgzd1462030139.ps tmp/2dgzd1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/3q2oe1462030139.ps tmp/3q2oe1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/4mku01462030139.ps tmp/4mku01462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/54cyo1462030139.ps tmp/54cyo1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/6tz521462030139.ps tmp/6tz521462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/7t78z1462030139.ps tmp/7t78z1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/80p1d1462030139.ps tmp/80p1d1462030139.png",intern=TRUE)) character(0) > try(system("convert tmp/9dtnl1462030139.ps tmp/9dtnl1462030139.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 3.562 0.679 4.275