R version 3.2.4 (2016-03-10) -- "Very Secure Dishes" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > x <- c(100.57,100.27,100.27,100.18,100.16,100.18,100.18,100.59,100.69,101.06,101.15,101.16,101.16,100.81,100.94,101.13,101.29,101.34,101.35,101.7,102.05,102.48,102.66,102.72,102.73,102.18,102.22,102.37,102.53,102.61,102.62,103,103.17,103.52,103.69,103.73,99.57,99.09,99.14,99.36,99.6,99.65,99.8,100.15,100.45,100.89,101.13,101.17,101.21,101.1,101.17,101.11,101.2,101.15,100.92,101.1,101.22,101.25,101.39,101.43,101.95,101.92,102.05,102.07,102.1,102.16,101.63,101.43,101.4,101.6,101.72,101.73) > par1 = '12' > par1 <- '12' > #'GNU S' R Code compiled by R2WASP v. 1.2.291 () > #Author: root > #To cite this work: Wessa P., (2012), Standard Deviation Plot (v1.0.2) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/rwasp_sdplot.wasp/ > #Source of accompanying publication: Office for Research, Development, and Education > # > par1 <- as.numeric(par1) > (n <- length(x)) [1] 72 > (np <- floor(n / par1)) [1] 6 > arr <- array(NA,dim=c(par1,np+1)) > ari <- array(0,dim=par1) > j <- 0 > for (i in 1:n) + { + j = j + 1 + ari[j] = ari[j] + 1 + arr[j,ari[j]] <- x[i] + if (j == par1) j = 0 + } > ari [1] 6 6 6 6 6 6 6 6 6 6 6 6 > arr [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 100.57 101.16 102.73 99.57 101.21 101.95 NA [2,] 100.27 100.81 102.18 99.09 101.10 101.92 NA [3,] 100.27 100.94 102.22 99.14 101.17 102.05 NA [4,] 100.18 101.13 102.37 99.36 101.11 102.07 NA [5,] 100.16 101.29 102.53 99.60 101.20 102.10 NA [6,] 100.18 101.34 102.61 99.65 101.15 102.16 NA [7,] 100.18 101.35 102.62 99.80 100.92 101.63 NA [8,] 100.59 101.70 103.00 100.15 101.10 101.43 NA [9,] 100.69 102.05 103.17 100.45 101.22 101.40 NA [10,] 101.06 102.48 103.52 100.89 101.25 101.60 NA [11,] 101.15 102.66 103.69 101.13 101.39 101.72 NA [12,] 101.16 102.72 103.73 101.17 101.43 101.73 NA > arr.sd <- array(NA,dim=par1) > arr.range <- array(NA,dim=par1) > arr.iqr <- array(NA,dim=par1) > for (j in 1:par1) + { + arr.sd[j] <- sqrt(var(arr[j,],na.rm=TRUE)) + arr.range[j] <- max(arr[j,],na.rm=TRUE) - min(arr[j,],na.rm=TRUE) + arr.iqr[j] <- quantile(arr[j,],0.75,na.rm=TRUE) - quantile(arr[j,],0.25,na.rm=TRUE) + } > overall.sd <- sqrt(var(x)) > overall.range <- max(x) - min(x) > overall.iqr <- quantile(x,0.75) - quantile(x,0.25) > postscript(file="/var/wessaorg/rcomp/tmp/1w8ac1458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.sd,type='b',ylab='S.D.',main='Standard Deviation Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.sd,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/2kgye1458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.range,type='b',ylab='range',main='Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.range,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/3mlzz1458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > plot(arr.iqr,type='b',ylab='IQR',main='Interquartile Range Plot',xlab='Periodic Index') > mtext(paste('# blocks = ',np)) > abline(overall.iqr,0) > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/4myl31458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(t(arr)) > names(z) <- c(1:par1) > (boxplot(z,notch=TRUE,col='grey',xlab='Periodic Index',ylab='Value',main='Notched Box Plots - Periodic Subseries')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [1,] 99.570 99.090 99.140 99.36 99.600 99.650 99.800 100.150 100.45 [2,] 100.570 100.270 100.270 100.18 100.160 100.180 100.180 100.590 100.69 [3,] 101.185 100.955 101.055 101.12 101.245 101.245 101.135 101.265 101.31 [4,] 101.950 101.920 102.050 102.07 102.100 102.160 101.630 101.700 102.05 [5,] 102.730 102.180 102.220 102.37 102.530 102.610 102.620 103.000 103.17 [,10] [,11] [,12] [1,] 100.890 101.130 101.16 [2,] 101.060 101.150 101.17 [3,] 101.425 101.555 101.58 [4,] 102.480 102.660 102.72 [5,] 103.520 103.690 103.73 $n [1] 6 6 6 6 6 6 6 6 6 6 6 6 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 100.2949 99.8907 99.90684 99.90089 99.99364 99.96784 100.1997 100.549 [2,] 102.0751 102.0193 102.20316 102.33911 102.49636 102.52216 102.0703 101.981 [,9] [,10] [,11] [,12] [1,] 100.4328 100.5091 100.581 100.5802 [2,] 102.1872 102.3409 102.529 102.5798 $out numeric(0) $group numeric(0) $names [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" "12" Warning message: In bxp(list(stats = c(99.57, 100.57, 101.185, 101.95, 102.73, 99.09, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/5wrm51458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(arr) > names(z) <- c(1:np) > (boxplot(z,notch=TRUE,col='grey',xlab='Block Index',ylab='Value',main='Notched Box Plots - Sequential Blocks')) $stats [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 100.160 100.810 102.180 99.090 100.920 101.400 NA [2,] 100.180 101.145 102.450 99.465 101.105 101.615 NA [3,] 100.420 101.345 102.675 99.725 101.185 101.825 NA [4,] 100.875 102.265 103.345 100.670 101.235 102.060 NA [5,] 101.160 102.720 103.730 101.170 101.430 102.160 NA $n [1] 12 12 12 12 12 12 0 $conf [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 100.103 100.8342 102.2668 99.17539 101.1257 101.622 NA [2,] 100.737 101.8558 103.0832 100.27461 101.2443 102.028 NA $out numeric(0) $group numeric(0) $names [1] "1" "2" "3" "4" "5" "6" NA Warning message: In bxp(list(stats = c(100.16, 100.18, 100.42, 100.875, 101.16, 100.81, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > postscript(file="/var/wessaorg/rcomp/tmp/6ia3k1458315922.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) > z <- data.frame(cbind(arr.sd,arr.range,arr.iqr)) > names(z) <- list('S.D.','Range','IQR') > (boxplot(z,notch=TRUE,col='grey',ylab='Overall Variability',main='Notched Box Plots')) $stats [,1] [,2] [,3] [1,] 0.9928427 2.560 0.91500 [2,] 1.0173107 2.675 1.10875 [3,] 1.0607698 2.890 1.22625 [4,] 1.1301513 3.045 1.40750 [5,] 1.1496565 3.160 1.53250 $n [1] 12 12 12 $conf [,1] [,2] [,3] [1,] 1.009302 2.721241 1.089988 [2,] 1.112237 3.058759 1.362512 $out numeric(0) $group numeric(0) $names [1] "S.D." "Range" "IQR" Warning message: In bxp(list(stats = c(0.992842720004868, 1.01731069072678, 1.06076980010375, : some notches went outside hinges ('box'): maybe set notch=FALSE > dev.off() null device 1 > > try(system("convert tmp/1w8ac1458315922.ps tmp/1w8ac1458315922.png",intern=TRUE)) character(0) > try(system("convert tmp/2kgye1458315922.ps tmp/2kgye1458315922.png",intern=TRUE)) character(0) > try(system("convert tmp/3mlzz1458315922.ps tmp/3mlzz1458315922.png",intern=TRUE)) character(0) > try(system("convert tmp/4myl31458315922.ps tmp/4myl31458315922.png",intern=TRUE)) character(0) > try(system("convert tmp/5wrm51458315922.ps tmp/5wrm51458315922.png",intern=TRUE)) character(0) > try(system("convert tmp/6ia3k1458315922.ps tmp/6ia3k1458315922.png",intern=TRUE)) character(0) > > > proc.time() user system elapsed 2.235 0.398 2.654