source('/home/pw/wessanet/cretab')



myrfcuid = 'q1152694-2018'

x <- array(list(14,13,22,19,16,24,17,17,26,17,NA,21,15,NA,26,20,16,25,15,NA,21,19,NA,24,15,NA,27,15,17,28,19,17,23,NA,15,25,20,16,24,18,14,24,15,16,24,14,17,25,20,NA,25,NA,NA,NA,16,NA,25,16,NA,25,16,16,24,10,NA,26,19,16,26,19,NA,25,16,NA,26,15,NA,23,18,16,24,17,15,24,19,16,25,17,16,25,NA,13,24,19,15,28,20,17,27,5,NA,NA,19,13,23,16,17,23,15,NA,24,16,14,24,18,14,22,16,18,25,15,NA,25,17,17,28,NA,13,22,20,16,28,19,15,25,7,15,24,13,NA,24,16,15,23,16,13,25,NA,NA,NA,18,17,26,18,NA,25,16,NA,27,17,11,26,19,14,23,16,13,25,19,NA,21,13,17,22,16,16,24,13,NA,25,12,17,27,17,16,24,17,16,26,17,16,21,16,15,27,16,12,22,14,17,23,16,14,24,13,14,25,16,16,24,14,NA,23,20,NA,28,12,NA,NA,13,NA,24,18,NA,26,14,15,22,19,16,25,18,14,25,14,15,24,18,17,24,19,NA,26,15,10,21,14,NA,25,17,17,25,19,NA,26,13,20,25,19,17,26,18,18,27,20,NA,25,15,17,NA,15,14,20,15,NA,24,20,17,26,15,NA,25,19,17,25,18,NA,24,18,16,26,15,18,25,20,18,28,17,16,27,12,NA,25,18,NA,26,19,15,26,20,13,26,NA,NA,NA,17,NA,28,15,NA,NA,16,NA,21,18,NA,25,18,16,25,14,NA,24,15,NA,24,12,NA,24,17,12,23,14,NA,23,18,16,24,17,16,24,17,NA,25,20,16,28,16,14,23,14,15,24,15,14,23,18,NA,24,20,15,25,17,NA,24,17,15,23,17,16,23,17,NA,25,15,NA,21,17,NA,22,18,11,19,17,NA,24,20,18,25,15,NA,21,16,11,22,15,NA,23,18,18,27,11,NA,NA,15,15,26,18,19,29,20,17,28,19,NA,24,14,14,25,16,NA,25,15,13,22,17,17,25,18,14,26,20,19,26,17,14,24,18,NA,25,15,NA,19,16,16,25,11,16,23,15,15,25,18,12,25,17,NA,26,16,17,27,12,NA,24,19,NA,22,18,18,25,15,15,24,17,18,23,19,15,27,18,NA,24,19,NA,24,16,NA,21,16,16,25,16,NA,25,14,16,23),dim=c(3,169),dimnames=list(c('ITHSUM','TVDC','SKEOUSUM'),1:169))
 y <- array(NA,dim=c(3,169),dimnames=list(c('ITHSUM','TVDC','SKEOUSUM'),1:169))
 for (i in 1:dim(x)[1])
 {
 	for (j in 1:dim(x)[2])
 	{
 		y[i,j] <- as.numeric(x[i,j])
 	}
 }
par1 = 'pearson'
main = 'Scatter Plots and p-values'
par1 <- 'pearson'
#'GNU S' R Code compiled by R2WASP v. 1.2.327 (Thu, 22 Sep 2016 20:11:42 +0200)
#Author: root
#To cite this work: Patrick Wessa, (2016), Multivariate Correlation Matrix (v1.0.11) in Free Statistics Software (v$_version), Office for Research Development and Education, URL http://www.wessa.net/Patrick.Wessa/rwasp_pairs.wasp/
#Source of accompanying publication: 
#
panel.tau <- function(x, y, digits=2, prefix='', cex.cor)
{
usr <- par('usr'); on.exit(par(usr))
par(usr = c(0, 1, 0, 1))
rr <- cor.test(x, y, method=par1)
r <- round(rr$p.value,2)
txt <- format(c(r, 0.123456789), digits=digits)[1]
txt <- paste(prefix, txt, sep='')
if(missing(cex.cor)) cex <- 0.5/strwidth(txt)
text(0.5, 0.5, txt, cex = cex)
}
panel.hist <- function(x, ...)
{
usr <- par('usr'); on.exit(par(usr))
par(usr = c(usr[1:2], 0, 1.5) )
h <- hist(x, plot = FALSE)
breaks <- h$breaks; nB <- length(breaks)
y <- h$counts; y <- y/max(y)
rect(breaks[-nB], 0, breaks[-1], y, col='grey', ...)
}
x <- na.omit(x)
y <- t(na.omit(t(y)))
postscript(file="/home/pw/wessanet/rcomp/tmp/1cneq1548060802.ps",horizontal=F,onefile=F,pagecentre=F,paper="special",width=8.3333333333333,height=5.5555555555556) 
pairs(t(y),diag.panel=panel.hist, upper.panel=panel.smooth, lower.panel=panel.tau, main=main)
dev.off()

n <- length(y[,1])
print(n)
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,paste('Correlations for all pairs of data series (method=',par1,')',sep=''),n+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,' ',header=TRUE)
for (i in 1:n) {
a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
}
a<-table.row.end(a)
for (i in 1:n) {
a<-table.row.start(a)
a<-table.element(a,dimnames(t(x))[[2]][i],header=TRUE)
for (j in 1:n) {
r <- cor.test(y[i,],y[j,],method=par1)
a<-table.element(a,round(r$estimate,3))
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file="/home/pw/wessanet/rcomp/tmp/2ypqi1548060802.tab") 
ncorrs <- (n*n -n)/2
mycorrs <- array(0, dim=c(10,3))
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Correlations for all pairs of data series with p-values',4,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'pair',1,TRUE)
a<-table.element(a,'Pearson r',1,TRUE)
a<-table.element(a,'Spearman rho',1,TRUE)
a<-table.element(a,'Kendall tau',1,TRUE)
a<-table.row.end(a)
cor.test(y[1,],y[2,],method=par1)
for (i in 1:(n-1))
{
for (j in (i+1):n)
{
a<-table.row.start(a)
dum <- paste(dimnames(t(x))[[2]][i],';',dimnames(t(x))[[2]][j],sep='')
a<-table.element(a,dum,header=TRUE)
rp <- cor.test(y[i,],y[j,],method='pearson')
a<-table.element(a,round(rp$estimate,4))
rs <- cor.test(y[i,],y[j,],method='spearman')
a<-table.element(a,round(rs$estimate,4))
rk <- cor.test(y[i,],y[j,],method='kendall')
a<-table.element(a,round(rk$estimate,4))
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'p-value',header=T)
a<-table.element(a,paste('(',round(rp$p.value,4),')',sep=''))
a<-table.element(a,paste('(',round(rs$p.value,4),')',sep=''))
a<-table.element(a,paste('(',round(rk$p.value,4),')',sep=''))
a<-table.row.end(a)
for (iii in 1:10) {
iiid100 <- iii / 100
if (rp$p.value < iiid100) mycorrs[iii, 1] = mycorrs[iii, 1] + 1
if (rs$p.value < iiid100) mycorrs[iii, 2] = mycorrs[iii, 2] + 1
if (rk$p.value < iiid100) mycorrs[iii, 3] = mycorrs[iii, 3] + 1
}
}
}
a<-table.end(a)
table.save(a,file="/home/pw/wessanet/rcomp/tmp/3gsdw1548060802.tab") 
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Meta Analysis of Correlation Tests',4,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Number of significant by total number of Correlations',4,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Type I error',1,TRUE)
a<-table.element(a,'Pearson r',1,TRUE)
a<-table.element(a,'Spearman rho',1,TRUE)
a<-table.element(a,'Kendall tau',1,TRUE)
a<-table.row.end(a)
for (iii in 1:10) {
iiid100 <- iii / 100
a<-table.row.start(a)
a<-table.element(a,round(iiid100,2),header=T)
a<-table.element(a,round(mycorrs[iii,1]/ncorrs,2))
a<-table.element(a,round(mycorrs[iii,2]/ncorrs,2))
a<-table.element(a,round(mycorrs[iii,3]/ncorrs,2))
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file="/home/pw/wessanet/rcomp/tmp/4w3jc1548060802.tab") 

try(system("convert /home/pw/wessanet/rcomp/tmp/1cneq1548060802.ps /home/pw/wessanet/rcomp/tmp/1cneq1548060802.png",intern=TRUE))