par5 <- 'Yes'
par4 <- '0'
par3 <- '2'
par2 <- '-8'
par1 <- 'Simple Box-Cox transform'
library(car)
par2 <- abs(as.numeric(par2)*100)
par3 <- as.numeric(par3)*100
if(par4=='') par4 <- 0
par4 <- as.numeric(par4)
numlam <- par2 + par3 + 1
x <- x + par4
n <- length(x)
c <- array(NA,dim=c(numlam))
l <- array(NA,dim=c(numlam))
mx <- -1
mxli <- -999
for (i in 1:numlam)
{
l[i] <- (i-par2-1)/100
if (l[i] != 0)
{
if (par1 == 'Full Box-Cox transform') x1 <- (x^l[i] - 1) / l[i]
if (par1 == 'Simple Box-Cox transform') x1 <- x^l[i]
} else {
x1 <- log(x)
}
c[i] <- cor(qnorm(ppoints(x), mean=0, sd=1),sort(x1))
if (mx < c[i])
{
mx <- c[i]
mxli <- l[i]
x1.best <- x1
}
}
print(c)
print(mx)
print(mxli)
print(x1.best)
if (mxli != 0)
{
if (par1 == 'Full Box-Cox transform') x1 <- (x^mxli - 1) / mxli
if (par1 == 'Simple Box-Cox transform') x1 <- x^mxli
} else {
x1 <- log(x)
}
mypT <- powerTransform(x)
summary(mypT)
bitmap(file='test1.png')
plot(l,c,main='Box-Cox Normality Plot', xlab='Lambda',ylab='correlation')
mtext(paste('Optimal Lambda =',mxli))
grid()
dev.off()
bitmap(file='test2.png')
hist(x,main='Histogram of Original Data',xlab='X',ylab='frequency')
grid()
dev.off()
bitmap(file='test3.png')
hist(x1,main='Histogram of Transformed Data', xlab='X',ylab='frequency')
grid()
dev.off()
bitmap(file='test4.png')
qqPlot(x)
grid()
mtext('Original Data')
dev.off()
bitmap(file='test5.png')
qqPlot(x1)
grid()
mtext('Transformed Data')
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Box-Cox Normality Plot',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'# observations x',header=TRUE)
a<-table.element(a,n)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'maximum correlation',header=TRUE)
a<-table.element(a,mx)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'optimal lambda',header=TRUE)
a<-table.element(a,mxli)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'transformation formula',header=TRUE)
if (par1 == 'Full Box-Cox transform') {
a<-table.element(a,'for all lambda <> 0 : T(Y) = (Y^lambda - 1) / lambda')
} else {
a<-table.element(a,'for all lambda <> 0 : T(Y) = Y^lambda')
}
a<-table.row.end(a)
if(mx<0) {
a<-table.row.start(a)
a<-table.element(a,'Warning: maximum correlation is negative! The Box-Cox transformation must not be used.',2)
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable.tab')
if(par5=='Yes') {
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Obs.',header=T)
a<-table.element(a,'Original',header=T)
a<-table.element(a,'Transformed',header=T)
a<-table.row.end(a)
for (i in 1:n) {
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,x[i])
a<-table.element(a,x1.best[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
}
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Maximum Likelihood Estimation of Lambda',1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste('<pre>',RC.texteval('summary(mypT)'),'</pre>',sep=''))
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable3.tab')
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