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Description of Statistical Computation

Author's title

Author*The author of this computation has been verified*
R Software Modulerwasp_chi_squared_tests.wasp
Title produced by softwareChi-Squared Test, McNemar Test, and Fisher Exact Test
Date of computationWed, 16 Dec 2015 14:50:40 +0000
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2015/Dec/16/t1450277454c1hufibktxmnsyh.htm/, Retrieved Thu, 16 May 2024 13:26:57 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=286705, Retrieved Thu, 16 May 2024 13:26:57 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact65

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-     [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 11:30:16] [bb1b6762b7e5624d262776d3f7139d34]
- R P   [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 11:32:12] [bb1b6762b7e5624d262776d3f7139d34]
-   P     [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 12:16:37] [bb1b6762b7e5624d262776d3f7139d34]
-   P       [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:41:50] [bb1b6762b7e5624d262776d3f7139d34]
-   P         [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:43:18] [bb1b6762b7e5624d262776d3f7139d34]
-   P           [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:44:21] [bb1b6762b7e5624d262776d3f7139d34]
-   P             [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:47:45] [bb1b6762b7e5624d262776d3f7139d34]
-   P               [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:48:46] [bb1b6762b7e5624d262776d3f7139d34]
-   P                 [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:49:45] [bb1b6762b7e5624d262776d3f7139d34]
-   P                     [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:50:40] [b4712dc468fc78917cdf7a5954f8e48b] [Current]
-   P                       [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:51:55] [bb1b6762b7e5624d262776d3f7139d34]
-   P                         [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:53:07] [bb1b6762b7e5624d262776d3f7139d34]
-                               [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:54:14] [bb1b6762b7e5624d262776d3f7139d34]
-                                 [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:55:30] [bb1b6762b7e5624d262776d3f7139d34]
-                                   [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:56:39] [bb1b6762b7e5624d262776d3f7139d34]
-                                     [Chi-Squared Test, McNemar Test, and Fisher Exact Test] [] [2015-12-16 14:57:37] [bb1b6762b7e5624d262776d3f7139d34]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
'Low'	'High'	'High'	'Low'	'Low'	'High'
'Low'	'High'	'Low'	'Low'	'High'	'High'
'High'	'Low'	'High'	'Low'	'Low'	'High'
'Low'	'High'	'Low'	'High'	'Low'	'High'
'High'	'Low'	'Low'	'High'	'Low'	'Low'
'Low'	'Low'	'High'	'High'	'High'	'Low'
'High'	'Low'	'Low'	'High'	'Low'	'High'
'High'	'Low'	'Low'	'Low'	'High'	'Low'
'High'	'Low'	'High'	'High'	'Low'	'Low'
'Low'	'High'	'Low'	'Low'	'Low'	'High'
'High'	'Low'	'Low'	'Low'	'High'	'Low'
'Low'	'High'	'Low'	'High'	'Low'	'High'
'High'	'High'	'Low'	'Low'	'High'	'Low'
'Low'	'High'	'High'	'High'	'High'	'Low'
'High'	'High'	'Low'	'Low'	'High'	'High'

Tables (Output of Computation)





Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R Server'Gwilym Jenkins' @ jenkins.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 1 seconds \tabularnewline
R Server & 'Gwilym Jenkins' @ jenkins.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=286705&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]1 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gwilym Jenkins' @ jenkins.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=286705&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=286705&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R Server'Gwilym Jenkins' @ jenkins.wessa.net






Tabulation of Results
Geel x Oranje
HighLow
High62
Low25

\begin{tabular}{lllllllll}
\hline
Tabulation of Results \tabularnewline
Geel  x  Oranje \tabularnewline
  & High & Low \tabularnewline
High & 6 & 2 \tabularnewline
Low & 2 & 5 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=286705&T=1

[TABLE]
[ROW][C]Tabulation of Results[/C][/ROW]
[ROW][C]Geel  x  Oranje[/C][/ROW]
[ROW][C] [/C][C]High[/C][C]Low[/C][/ROW]
[C]High[/C][C]6[/C][C]2[/C][/ROW]
[C]Low[/C][C]2[/C][C]5[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=286705&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=286705&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Tabulation of Results
Geel x Oranje
HighLow
High62
Low25






Tabulation of Expected Results
Geel x Oranje
HighLow
High4.273.73
Low3.733.27

\begin{tabular}{lllllllll}
\hline
Tabulation of Expected Results \tabularnewline
Geel  x  Oranje \tabularnewline
  & High & Low \tabularnewline
High & 4.27 & 3.73 \tabularnewline
Low & 3.73 & 3.27 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=286705&T=2

[TABLE]
[ROW][C]Tabulation of Expected Results[/C][/ROW]
[ROW][C]Geel  x  Oranje[/C][/ROW]
[ROW][C] [/C][C]High[/C][C]Low[/C][/ROW]
[C]High[/C][C]4.27[/C][C]3.73[/C][/ROW]
[C]Low[/C][C]3.73[/C][C]3.27[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=286705&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=286705&T=2

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Tabulation of Expected Results
Geel x Oranje
HighLow
High4.273.73
Low3.733.27






Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic3.23
P value0.14

\begin{tabular}{lllllllll}
\hline
Statistical Results \tabularnewline
Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates) \tabularnewline
Exact Pearson Chi Square Statistic & 3.23 \tabularnewline
P value & 0.14 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=286705&T=3

[TABLE]
[ROW][C]Statistical Results[/C][/ROW]
[ROW][C]Pearson's Chi-squared test with simulated p-value
	 (based on 2000 replicates)[/C][/ROW]
[ROW][C]Exact Pearson Chi Square Statistic[/C][C]3.23[/C][/ROW]
[ROW][C]P value[/C][C]0.14[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=286705&T=3

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=286705&T=3

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Statistical Results
Pearson's Chi-squared test with simulated p-value (based on 2000 replicates)
Exact Pearson Chi Square Statistic3.23
P value0.14


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = 2 ; par2 = 6 ; par3 = Exact Pearson Chi-Squared by Simulation ;
Parameters (R input):
par1 = 2 ; par2 = 6 ; par3 = Exact Pearson Chi-Squared by Simulation ;
R code (references can be found in the software module):
library(vcd)
cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
simulate.p.value=FALSE
if (par3 == 'Exact Pearson Chi-Squared by Simulation') simulate.p.value=TRUE
x <- t(x)
(z <- array(unlist(x),dim=c(length(x[,1]),length(x[1,]))))
(table1 <- table(z[,cat1],z[,cat2]))
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
bitmap(file='pic1.png')
assoc(ftable(z[,cat1],z[,cat2],row.vars=1,dnn=c(V1,V2)),shade=T)
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, table1[nr, nc], 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable.tab')
(cst<-chisq.test(table1, simulate.p.value=simulate.p.value) )
if (par3 == 'McNemar Chi-Squared') {
(cst <- mcnemar.test(table1))
}
if (par3=='Fisher Exact Test') {
(cst <- fisher.test(table1))
}
if ((par3 != 'McNemar Chi-Squared') & (par3 != 'Fisher Exact Test')) {
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tabulation of Expected Results',ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,paste(V1,' x ', V2),ncol(table1)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1,TRUE)
for(nc in 1:ncol(table1)){
a<-table.element(a, colnames(table1)[nc], 1, TRUE)
}
a<-table.row.end(a)
for(nr in 1:nrow(table1) ){
a<-table.element(a, rownames(table1)[nr], 1, TRUE)
for(nc in 1:ncol(table1) ){
a<-table.element(a, round(cst$expected[nr, nc], digits=2), 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
}
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Statistical Results',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, cst$method, 2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
if (par3=='Pearson Chi-Squared') a<-table.element(a, 'Pearson Chi Square Statistic', 1, TRUE)
if (par3=='Exact Pearson Chi-Squared by Simulation') a<-table.element(a, 'Exact Pearson Chi Square Statistic', 1, TRUE)
if (par3=='McNemar Chi-Squared') a<-table.element(a, 'McNemar Chi Square Statistic', 1, TRUE)
if (par3=='Fisher Exact Test') a<-table.element(a, 'Odds Ratio', 1, TRUE)
if (par3=='Fisher Exact Test') {
if ((ncol(table1) == 2) & (nrow(table1) == 2)) {
a<-table.element(a, round(cst$estimate, digits=2), 1,FALSE)
} else {
a<-table.element(a, '--', 1,FALSE)
}
} else {
a<-table.element(a, round(cst$statistic, digits=2), 1,FALSE)
}
a<-table.row.end(a)
if(!simulate.p.value){
if(par3!='Fisher Exact Test') {
a<-table.row.start(a)
a<-table.element(a, 'Degrees of Freedom', 1, TRUE)
a<-table.element(a, cst$parameter, 1,FALSE)
a<-table.row.end(a)
}
}
a<-table.row.start(a)
a<-table.element(a, 'P value', 1, TRUE)
a<-table.element(a, round(cst$p.value, digits=2), 1,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')