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Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationFri, 17 Feb 2012 09:37:11 -0500
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2012/Feb/17/t13294903051oq4xjok8xbdrmb.htm/, Retrieved Sat, 27 Apr 2024 09:53:51 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=162766, Retrieved Sat, 27 Apr 2024 09:53:51 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact130

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-       [Hierarchical Clustering] [prueba1 tipo tene...] [2012-02-17 14:37:11] [d41d8cd98f00b204e9800998ecf8427e] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
30.81	25.68	43.51
40.22	18.60	41.18
36.29	14.44	49.27
38.74	14.71	46.55
27.96	32.38	39.66
39.80	23.64	36.56
40.71	7.46	51.84
41.84	19.04	39.12
34.72	23.47	41,81
35.98	12.12	51.90
47.82	6.45	45.73
44.45	11.20	44.35
49.55	8.29	42.15
36.75	14.08	49.17
49.67	5.55	44.78
38.94	16.51	44.55
41.80	12.04	46.16
33.99	25.23	40.78
50.38	11.75	37.86
27.53	22.82	49.65
36.04	12.06	51.91
41.18	22.03	36.79
39.94	8.21	51.86
40.06	9.45	50.49
41.98	16.49	41.52

Tables (Output of Computation)





Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R Server'Gwilym Jenkins' @ jenkins.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 1 seconds \tabularnewline
R Server & 'Gwilym Jenkins' @ jenkins.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=162766&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]1 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gwilym Jenkins' @ jenkins.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=162766&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=162766&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time1 seconds
R Server'Gwilym Jenkins' @ jenkins.wessa.net






Summary of Dendrogram
LabelHeight
10.0854400374531758
20.592621295601163
31.07508139226758
42.13293225396401
52.16596398862031
62.26605383872493
72.53679469295897
82.65736711803244
92.69814751264641
103.29635131604191
113.31725790375123
124.69868453814153
135.28967785167345
146.66552212922413
159.15953333946912
1610.61850985808
1711.6571047377834
1812.6587023778216
1913.2779175884707
2017.13699858567
2120.8324759765232
2240.1066110142325
2350.3296374391434
2495.8640465872671

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0.0854400374531758 \tabularnewline
2 & 0.592621295601163 \tabularnewline
3 & 1.07508139226758 \tabularnewline
4 & 2.13293225396401 \tabularnewline
5 & 2.16596398862031 \tabularnewline
6 & 2.26605383872493 \tabularnewline
7 & 2.53679469295897 \tabularnewline
8 & 2.65736711803244 \tabularnewline
9 & 2.69814751264641 \tabularnewline
10 & 3.29635131604191 \tabularnewline
11 & 3.31725790375123 \tabularnewline
12 & 4.69868453814153 \tabularnewline
13 & 5.28967785167345 \tabularnewline
14 & 6.66552212922413 \tabularnewline
15 & 9.15953333946912 \tabularnewline
16 & 10.61850985808 \tabularnewline
17 & 11.6571047377834 \tabularnewline
18 & 12.6587023778216 \tabularnewline
19 & 13.2779175884707 \tabularnewline
20 & 17.13699858567 \tabularnewline
21 & 20.8324759765232 \tabularnewline
22 & 40.1066110142325 \tabularnewline
23 & 50.3296374391434 \tabularnewline
24 & 95.8640465872671 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=162766&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0.0854400374531758[/C][/ROW]
[ROW][C]2[/C][C]0.592621295601163[/C][/ROW]
[ROW][C]3[/C][C]1.07508139226758[/C][/ROW]
[ROW][C]4[/C][C]2.13293225396401[/C][/ROW]
[ROW][C]5[/C][C]2.16596398862031[/C][/ROW]
[ROW][C]6[/C][C]2.26605383872493[/C][/ROW]
[ROW][C]7[/C][C]2.53679469295897[/C][/ROW]
[ROW][C]8[/C][C]2.65736711803244[/C][/ROW]
[ROW][C]9[/C][C]2.69814751264641[/C][/ROW]
[ROW][C]10[/C][C]3.29635131604191[/C][/ROW]
[ROW][C]11[/C][C]3.31725790375123[/C][/ROW]
[ROW][C]12[/C][C]4.69868453814153[/C][/ROW]
[ROW][C]13[/C][C]5.28967785167345[/C][/ROW]
[ROW][C]14[/C][C]6.66552212922413[/C][/ROW]
[ROW][C]15[/C][C]9.15953333946912[/C][/ROW]
[ROW][C]16[/C][C]10.61850985808[/C][/ROW]
[ROW][C]17[/C][C]11.6571047377834[/C][/ROW]
[ROW][C]18[/C][C]12.6587023778216[/C][/ROW]
[ROW][C]19[/C][C]13.2779175884707[/C][/ROW]
[ROW][C]20[/C][C]17.13699858567[/C][/ROW]
[ROW][C]21[/C][C]20.8324759765232[/C][/ROW]
[ROW][C]22[/C][C]40.1066110142325[/C][/ROW]
[ROW][C]23[/C][C]50.3296374391434[/C][/ROW]
[ROW][C]24[/C][C]95.8640465872671[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=162766&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=162766&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
LabelHeight
10.0854400374531758
20.592621295601163
31.07508139226758
42.13293225396401
52.16596398862031
62.26605383872493
72.53679469295897
82.65736711803244
92.69814751264641
103.29635131604191
113.31725790375123
124.69868453814153
135.28967785167345
146.66552212922413
159.15953333946912
1610.61850985808
1711.6571047377834
1812.6587023778216
1913.2779175884707
2017.13699858567
2120.8324759765232
2240.1066110142325
2350.3296374391434
2495.8640465872671


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}