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R Software Module

rwasp_bootstrapplot1.wasp

Title produced by software

Bootstrap Plot - Central Tendency

Date of computation

Mon, 04 Jan 2016 17:18:51 +0000

Cite this page as follows

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2016/Jan/04/t1451931338bu8q9gpmd0skory.htm/, Retrieved Sun, 05 May 2024 11:39:09 +0000

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=287325, Retrieved Sun, 05 May 2024 11:39:09 +0000

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IsPrivate?

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User-defined keywords

FAA PT CA Department of Public Health, Forensic Alcohol Program, Bootstrap simulation, November 2015 pool 1

Estimated Impact

150

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)

-       [Bootstrap Plot - Central Tendency] [CDPH pool 10195 b...] [2016-01-04 17:18:51] [d41d8cd98f00b204e9800998ecf8427e] [Current]
- RMPD    [Kernel Density Estimation] [CDPH pool 10265 G...] [2016-01-04 18:25:07] [74be16979710d4c4e7c6647856088456] 
- RMPD    [Maximum-likelihood Fitting - Weibull Distribution] [CDPH pool 10265 W...] [2016-01-04 18:53:31] [74be16979710d4c4e7c6647856088456] 
-   PD    [Bootstrap Plot - Central Tendency] [CDPH pool 10265 b...] [2016-01-04 19:02:05] [74be16979710d4c4e7c6647856088456] 

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Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	6 seconds
R Server	'George Udny Yule' @ yule.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 6 seconds \tabularnewline
R Server & 'George Udny Yule' @ yule.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=287325&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]6 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'George Udny Yule' @ yule.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=287325&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=287325&T=0

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	6 seconds
R Server	'George Udny Yule' @ yule.wessa.net

Estimation Results of Bootstrap
statistic	P1	P5	Q1	Estimate	Q3	P95	P99	S.D.	IQR
mean	0.13438	0.13492	0.13557	0.13596	0.13633	0.13677	0.13712	0.00058437	0.00075962
median	0.136	0.137	0.137	0.137	0.137	0.1375	0.138	0.00028686	0
midrange	0.1305	0.1305	0.1315	0.1325	0.133	0.1345	0.13651	0.0012998	0.0015
mode	0.137	0.137	0.137	0.137	0.138	0.139	0.139	0.00062075	0.001
mode k.dens	0.13653	0.13676	0.1371	0.13727	0.13743	0.13762	0.1378	0.00026771	0.00032475

\begin{tabular}{lllllllll}
\hline
Estimation Results of Bootstrap \tabularnewline
statistic & P1 & P5 & Q1 & Estimate & Q3 & P95 & P99 & S.D. & IQR \tabularnewline
mean & 0.13438 & 0.13492 & 0.13557 & 0.13596 & 0.13633 & 0.13677 & 0.13712 & 0.00058437 & 0.00075962 \tabularnewline
median & 0.136 & 0.137 & 0.137 & 0.137 & 0.137 & 0.1375 & 0.138 & 0.00028686 & 0 \tabularnewline
midrange & 0.1305 & 0.1305 & 0.1315 & 0.1325 & 0.133 & 0.1345 & 0.13651 & 0.0012998 & 0.0015 \tabularnewline
mode & 0.137 & 0.137 & 0.137 & 0.137 & 0.138 & 0.139 & 0.139 & 0.00062075 & 0.001 \tabularnewline
mode k.dens & 0.13653 & 0.13676 & 0.1371 & 0.13727 & 0.13743 & 0.13762 & 0.1378 & 0.00026771 & 0.00032475 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=287325&T=1

[TABLE]
[ROW][C]Estimation Results of Bootstrap[/C][/ROW]
[ROW][C]statistic[/C][C]P1[/C][C]P5[/C][C]Q1[/C][C]Estimate[/C][C]Q3[/C][C]P95[/C][C]P99[/C][C]S.D.[/C][C]IQR[/C][/ROW]
[ROW][C]mean[/C][C]0.13438[/C][C]0.13492[/C][C]0.13557[/C][C]0.13596[/C][C]0.13633[/C][C]0.13677[/C][C]0.13712[/C][C]0.00058437[/C][C]0.00075962[/C][/ROW]
[ROW][C]median[/C][C]0.136[/C][C]0.137[/C][C]0.137[/C][C]0.137[/C][C]0.137[/C][C]0.1375[/C][C]0.138[/C][C]0.00028686[/C][C]0[/C][/ROW]
[ROW][C]midrange[/C][C]0.1305[/C][C]0.1305[/C][C]0.1315[/C][C]0.1325[/C][C]0.133[/C][C]0.1345[/C][C]0.13651[/C][C]0.0012998[/C][C]0.0015[/C][/ROW]
[ROW][C]mode[/C][C]0.137[/C][C]0.137[/C][C]0.137[/C][C]0.137[/C][C]0.138[/C][C]0.139[/C][C]0.139[/C][C]0.00062075[/C][C]0.001[/C][/ROW]
[ROW][C]mode k.dens[/C][C]0.13653[/C][C]0.13676[/C][C]0.1371[/C][C]0.13727[/C][C]0.13743[/C][C]0.13762[/C][C]0.1378[/C][C]0.00026771[/C][C]0.00032475[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=287325&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=287325&T=1

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Estimation Results of Bootstrap
statistic	P1	P5	Q1	Estimate	Q3	P95	P99	S.D.	IQR
mean	0.13438	0.13492	0.13557	0.13596	0.13633	0.13677	0.13712	0.00058437	0.00075962
median	0.136	0.137	0.137	0.137	0.137	0.1375	0.138	0.00028686	0
midrange	0.1305	0.1305	0.1315	0.1325	0.133	0.1345	0.13651	0.0012998	0.0015
mode	0.137	0.137	0.137	0.137	0.138	0.139	0.139	0.00062075	0.001
mode k.dens	0.13653	0.13676	0.1371	0.13727	0.13743	0.13762	0.1378	0.00026771	0.00032475

Figure 1

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Figure 6

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Figure 7

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Figure 8

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Figure 9

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Figure 10

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Figure 11

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Parameters (Session):

par1 = 200 ; par2 = 5 ; par3 = 0.00257 ; par4 = P1 P5 Q1 Q3 P95 P99 ;

Parameters (R input):

par1 = 200 ; par2 = 5 ; par3 = 0.00257 ; par4 = P1 P5 Q1 Q3 P95 P99 ;

R code (references can be found in the software module):

par1 <- as.numeric(par1)
par2 <- as.numeric(par2)
if (par3 == '0') bw <- NULL
if (par3 != '0') bw <- as.numeric(par3)
if (par1 < 10) par1 = 10
if (par1 > 5000) par1 = 5000
library(modeest)
library(lattice)
library(boot)
boot.stat <- function(s,i)
{
s.mean <- mean(s[i])
s.median <- median(s[i])
s.midrange <- (max(s[i]) + min(s[i])) / 2
s.mode <- mlv(s[i], method='mfv')$M
s.kernelmode <- mlv(s[i], method='kernel', bw=bw)$M
c(s.mean, s.median, s.midrange, s.mode, s.kernelmode)
}
x<-na.omit(x)
(r <- boot(x,boot.stat, R=par1, stype='i'))
bitmap(file='plot1.png')
plot(r$t[,1],type='p',ylab='simulated values',main='Simulation of Mean')
grid()
dev.off()
bitmap(file='plot2.png')
plot(r$t[,2],type='p',ylab='simulated values',main='Simulation of Median')
grid()
dev.off()
bitmap(file='plot3.png')
plot(r$t[,3],type='p',ylab='simulated values',main='Simulation of Midrange')
grid()
dev.off()
bitmap(file='plot7.png')
plot(r$t[,4],type='p',ylab='simulated values',main='Simulation of Mode')
grid()
dev.off()
bitmap(file='plot8.png')
plot(r$t[,5],type='p',ylab='simulated values',main='Simulation of Mode of Kernel Density')
grid()
dev.off()
bitmap(file='plot4.png')
densityplot(~r$t[,1],col='black',main='Density Plot',xlab='mean')
dev.off()
bitmap(file='plot5.png')
densityplot(~r$t[,2],col='black',main='Density Plot',xlab='median')
dev.off()
bitmap(file='plot6.png')
densityplot(~r$t[,3],col='black',main='Density Plot',xlab='midrange')
dev.off()
bitmap(file='plot9.png')
densityplot(~r$t[,4],col='black',main='Density Plot',xlab='mode')
dev.off()
bitmap(file='plot10.png')
densityplot(~r$t[,5],col='black',main='Density Plot',xlab='mode of kernel dens.')
dev.off()
z <- data.frame(cbind(r$t[,1],r$t[,2],r$t[,3],r$t[,4],r$t[,5]))
colnames(z) <- list('mean','median','midrange','mode','mode k.dens')
bitmap(file='plot11.png')
boxplot(z,notch=TRUE,ylab='simulated values',main='Bootstrap Simulation - Central Tendency')
grid()
dev.off()
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Estimation Results of Bootstrap',10,TRUE)
a<-table.row.end(a)
if (par4 == 'P1 P5 Q1 Q3 P95 P99') {
myq.1 <- 0.01
myq.2 <- 0.05
myq.3 <- 0.95
myq.4 <- 0.99
myl.1 <- 'P1'
myl.2 <- 'P5'
myl.3 <- 'P95'
myl.4 <- 'P99'
}
if (par4 == 'P0.5 P2.5 Q1 Q3 P97.5 P99.5') {
myq.1 <- 0.005
myq.2 <- 0.025
myq.3 <- 0.975
myq.4 <- 0.995
myl.1 <- 'P0.5'
myl.2 <- 'P2.5'
myl.3 <- 'P97.5'
myl.4 <- 'P99.5'
}
if (par4 == 'P10 P20 Q1 Q3 P80 P90') {
myq.1 <- 0.10
myq.2 <- 0.20
myq.3 <- 0.80
myq.4 <- 0.90
myl.1 <- 'P10'
myl.2 <- 'P20'
myl.3 <- 'P80'
myl.4 <- 'P90'
}
a<-table.row.start(a)
a<-table.element(a,'statistic',header=TRUE)
a<-table.element(a,myl.1,header=TRUE)
a<-table.element(a,myl.2,header=TRUE)
a<-table.element(a,'Q1',header=TRUE)
a<-table.element(a,'Estimate',header=TRUE)
a<-table.element(a,'Q3',header=TRUE)
a<-table.element(a,myl.3,header=TRUE)
a<-table.element(a,myl.4,header=TRUE)
a<-table.element(a,'S.D.',header=TRUE)
a<-table.element(a,'IQR',header=TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'mean',header=TRUE)
q1 <- quantile(r$t[,1],0.25)[[1]]
q3 <- quantile(r$t[,1],0.75)[[1]]
p01 <- quantile(r$t[,1],myq.1)[[1]]
p05 <- quantile(r$t[,1],myq.2)[[1]]
p95 <- quantile(r$t[,1],myq.3)[[1]]
p99 <- quantile(r$t[,1],myq.4)[[1]]
a<-table.element(a,signif(p01,par2))
a<-table.element(a,signif(p05,par2))
a<-table.element(a,signif(q1,par2))
a<-table.element(a,signif(r$t0[1],par2))
a<-table.element(a,signif(q3,par2))
a<-table.element(a,signif(p95,par2))
a<-table.element(a,signif(p99,par2))
a<-table.element( a,signif( sqrt(var(r$t[,1])),par2 ) )
a<-table.element(a,signif(q3-q1,par2))
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'median',header=TRUE)
q1 <- quantile(r$t[,2],0.25)[[1]]
q3 <- quantile(r$t[,2],0.75)[[1]]
p01 <- quantile(r$t[,2],myq.1)[[1]]
p05 <- quantile(r$t[,2],myq.2)[[1]]
p95 <- quantile(r$t[,2],myq.3)[[1]]
p99 <- quantile(r$t[,2],myq.4)[[1]]
a<-table.element(a,signif(p01,par2))
a<-table.element(a,signif(p05,par2))
a<-table.element(a,signif(q1,par2))
a<-table.element(a,signif(r$t0[2],par2))
a<-table.element(a,signif(q3,par2))
a<-table.element(a,signif(p95,par2))
a<-table.element(a,signif(p99,par2))
a<-table.element(a,signif(sqrt(var(r$t[,2])),par2))
a<-table.element(a,signif(q3-q1,par2))
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'midrange',header=TRUE)
q1 <- quantile(r$t[,3],0.25)[[1]]
q3 <- quantile(r$t[,3],0.75)[[1]]
p01 <- quantile(r$t[,3],myq.1)[[1]]
p05 <- quantile(r$t[,3],myq.2)[[1]]
p95 <- quantile(r$t[,3],myq.3)[[1]]
p99 <- quantile(r$t[,3],myq.4)[[1]]
a<-table.element(a,signif(p01,par2))
a<-table.element(a,signif(p05,par2))
a<-table.element(a,signif(q1,par2))
a<-table.element(a,signif(r$t0[3],par2))
a<-table.element(a,signif(q3,par2))
a<-table.element(a,signif(p95,par2))
a<-table.element(a,signif(p99,par2))
a<-table.element(a,signif(sqrt(var(r$t[,3])),par2))
a<-table.element(a,signif(q3-q1,par2))
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'mode',header=TRUE)
q1 <- quantile(r$t[,4],0.25)[[1]]
q3 <- quantile(r$t[,4],0.75)[[1]]
p01 <- quantile(r$t[,4],myq.1)[[1]]
p05 <- quantile(r$t[,4],myq.2)[[1]]
p95 <- quantile(r$t[,4],myq.3)[[1]]
p99 <- quantile(r$t[,4],myq.4)[[1]]
a<-table.element(a,signif(p01,par2))
a<-table.element(a,signif(p05,par2))
a<-table.element(a,signif(q1,par2))
a<-table.element(a,signif(r$t0[4],par2))
a<-table.element(a,signif(q3,par2))
a<-table.element(a,signif(p95,par2))
a<-table.element(a,signif(p99,par2))
a<-table.element(a,signif(sqrt(var(r$t[,4])),par2))
a<-table.element(a,signif(q3-q1,par2))
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'mode k.dens',header=TRUE)
q1 <- quantile(r$t[,5],0.25)[[1]]
q3 <- quantile(r$t[,5],0.75)[[1]]
p01 <- quantile(r$t[,5],myq.1)[[1]]
p05 <- quantile(r$t[,5],myq.2)[[1]]
p95 <- quantile(r$t[,5],myq.3)[[1]]
p99 <- quantile(r$t[,5],myq.4)[[1]]
a<-table.element(a,signif(p01,par2))
a<-table.element(a,signif(p05,par2))
a<-table.element(a,signif(q1,par2))
a<-table.element(a,signif(r$t0[5],par2))
a<-table.element(a,signif(q3,par2))
a<-table.element(a,signif(p95,par2))
a<-table.element(a,signif(p99,par2))
a<-table.element(a,signif(sqrt(var(r$t[,5])),par2))
a<-table.element(a,signif(q3-q1,par2))
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable.tab')

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Input Parameters & R Code