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Description of Statistical Computation

Author's title

Author*The author of this computation has been verified*
R Software Modulerwasp_Two Factor ANOVA.wasp
Title produced by softwareTwo-Way ANOVA
Date of computationWed, 23 Jan 2019 06:42:53 +0100
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2019/Jan/23/t15482239424aksps9x0p4ixpf.htm/, Retrieved Sun, 05 May 2024 02:23:12 +0200
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=, Retrieved Sun, 05 May 2024 02:23:12 +0200
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact0

Tree of Dependent Computations

Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
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Tables (Output of Computation)





Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time6 seconds
R ServerBig Analytics Cloud Computing Center

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input view raw input (R code)  \tabularnewline
Raw Outputview raw output of R engine  \tabularnewline
Computing time6 seconds \tabularnewline
R ServerBig Analytics Cloud Computing Center \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=&T=0

[TABLE]
[ROW]
Summary of computational transaction[/C][/ROW] [ROW]Raw Input[/C] view raw input (R code) [/C][/ROW] [ROW]Raw Output[/C]view raw output of R engine [/C][/ROW] [ROW]Computing time[/C]6 seconds[/C][/ROW] [ROW]R Server[/C]Big Analytics Cloud Computing Center[/C][/ROW] [/TABLE] Source: https://freestatistics.org/blog/index.php?pk=&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time6 seconds
R ServerBig Analytics Cloud Computing Center






ANOVA Model
Response ~ Treatment_A * Treatment_B
means11.15-4.45-4.7510.1

\begin{tabular}{lllllllll}
\hline
ANOVA Model \tabularnewline
Response ~ Treatment_A * Treatment_B \tabularnewline
means & 11.15 & -4.45 & -4.75 & 10.1 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=&T=1

[TABLE]
[ROW][C]ANOVA Model[/C][/ROW]
[ROW][C]Response ~ Treatment_A * Treatment_B[/C][/ROW]
[ROW][C]means[/C][C]11.15[/C][C]-4.45[/C][C]-4.75[/C][C]10.1[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

ANOVA Model
Response ~ Treatment_A * Treatment_B
means11.15-4.45-4.7510.1






ANOVA Statistics
DfSum SqMean SqF valuePr(>F)
1
Treatment_A17.27.23.5880.062
Treatment_B11.81.80.8970.347
Treatment_A:Treatment_B1510.05510.05254.1890
Residuals76152.52.007 

\begin{tabular}{lllllllll}
\hline
ANOVA Statistics \tabularnewline
  & Df & Sum Sq & Mean Sq & F value & Pr(>F) \tabularnewline
 & 1 &  &  &  &  \tabularnewline
Treatment_A & 1 & 7.2 & 7.2 & 3.588 & 0.062 \tabularnewline
Treatment_B & 1 & 1.8 & 1.8 & 0.897 & 0.347 \tabularnewline
Treatment_A:Treatment_B & 1 & 510.05 & 510.05 & 254.189 & 0 \tabularnewline
Residuals & 76 & 152.5 & 2.007 &   &   \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=&T=2

[TABLE]
[ROW][C]ANOVA Statistics[/C][/ROW]
[ROW][C] [/C][C]Df[/C][C]Sum Sq[/C][C]Mean Sq[/C][C]F value[/C][C]Pr(>F)[/C][/ROW]
[ROW][C][/C][C]1[/C][C][/C][C][/C][C][/C][C][/C][/ROW]
[ROW][C]Treatment_A[/C][C]1[/C][C]7.2[/C][C]7.2[/C][C]3.588[/C][C]0.062[/C][/ROW]
[ROW][C]Treatment_B[/C][C]1[/C][C]1.8[/C][C]1.8[/C][C]0.897[/C][C]0.347[/C][/ROW]
[ROW][C]Treatment_A:Treatment_B[/C][C]1[/C][C]510.05[/C][C]510.05[/C][C]254.189[/C][C]0[/C][/ROW]
[ROW][C]Residuals[/C][C]76[/C][C]152.5[/C][C]2.007[/C][C] [/C][C] [/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=&T=2

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

ANOVA Statistics
DfSum SqMean SqF valuePr(>F)
1
Treatment_A17.27.23.5880.062
Treatment_B11.81.80.8970.347
Treatment_A:Treatment_B1510.05510.05254.1890
Residuals76152.52.007






Tukey Honest Significant Difference Comparisons
difflwruprp adj
c-b0.6-0.0311.2310.062
d-a0.3-0.3310.9310.347
c:a-b:a-4.45-5.627-3.2730
b:d-b:a-4.75-5.927-3.5730
c:d-b:a0.9-0.2772.0770.194
b:d-c:a-0.3-1.4770.8770.908
c:d-c:a5.354.1736.5270
c:d-b:d5.654.4736.8270

\begin{tabular}{lllllllll}
\hline
Tukey Honest Significant Difference Comparisons \tabularnewline
  & diff & lwr & upr & p adj \tabularnewline
c-b & 0.6 & -0.031 & 1.231 & 0.062 \tabularnewline
d-a & 0.3 & -0.331 & 0.931 & 0.347 \tabularnewline
c:a-b:a & -4.45 & -5.627 & -3.273 & 0 \tabularnewline
b:d-b:a & -4.75 & -5.927 & -3.573 & 0 \tabularnewline
c:d-b:a & 0.9 & -0.277 & 2.077 & 0.194 \tabularnewline
b:d-c:a & -0.3 & -1.477 & 0.877 & 0.908 \tabularnewline
c:d-c:a & 5.35 & 4.173 & 6.527 & 0 \tabularnewline
c:d-b:d & 5.65 & 4.473 & 6.827 & 0 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=&T=3

[TABLE]
[ROW][C]Tukey Honest Significant Difference Comparisons[/C][/ROW]
[ROW][C] [/C][C]diff[/C][C]lwr[/C][C]upr[/C][C]p adj[/C][/ROW]
[ROW][C]c-b[/C][C]0.6[/C][C]-0.031[/C][C]1.231[/C][C]0.062[/C][/ROW]
[ROW][C]d-a[/C][C]0.3[/C][C]-0.331[/C][C]0.931[/C][C]0.347[/C][/ROW]
[ROW][C]c:a-b:a[/C][C]-4.45[/C][C]-5.627[/C][C]-3.273[/C][C]0[/C][/ROW]
[ROW][C]b:d-b:a[/C][C]-4.75[/C][C]-5.927[/C][C]-3.573[/C][C]0[/C][/ROW]
[ROW][C]c:d-b:a[/C][C]0.9[/C][C]-0.277[/C][C]2.077[/C][C]0.194[/C][/ROW]
[ROW][C]b:d-c:a[/C][C]-0.3[/C][C]-1.477[/C][C]0.877[/C][C]0.908[/C][/ROW]
[ROW][C]c:d-c:a[/C][C]5.35[/C][C]4.173[/C][C]6.527[/C][C]0[/C][/ROW]
[ROW][C]c:d-b:d[/C][C]5.65[/C][C]4.473[/C][C]6.827[/C][C]0[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=&T=3

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=&T=3

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Tukey Honest Significant Difference Comparisons
difflwruprp adj
c-b0.6-0.0311.2310.062
d-a0.3-0.3310.9310.347
c:a-b:a-4.45-5.627-3.2730
b:d-b:a-4.75-5.927-3.5730
c:d-b:a0.9-0.2772.0770.194
b:d-c:a-0.3-1.4770.8770.908
c:d-c:a5.354.1736.5270
c:d-b:d5.654.4736.8270






Levenes Test for Homogeneity of Variance
DfF valuePr(>F)
Group30.4070.748
76 

\begin{tabular}{lllllllll}
\hline
Levenes Test for Homogeneity of Variance \tabularnewline
  & Df & F value & Pr(>F) \tabularnewline
Group & 3 & 0.407 & 0.748 \tabularnewline
  & 76 &   &   \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=&T=4

[TABLE]
[ROW][C]Levenes Test for Homogeneity of Variance[/C][/ROW]
[ROW][C] [/C][C]Df[/C][C]F value[/C][C]Pr(>F)[/C][/ROW]
[ROW][C]Group[/C][C]3[/C][C]0.407[/C][C]0.748[/C][/ROW]
[ROW][C] [/C][C]76[/C][C] [/C][C] [/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=&T=4

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=&T=4

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Levenes Test for Homogeneity of Variance
DfF valuePr(>F)
Group30.4070.748
76


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = 1 ; par2 = 2 ; par3 = 3 ; par4 = TRUE ;
Parameters (R input):
par1 = 1 ; par2 = 2 ; par3 = 3 ; par4 = TRUE ;
R code (references can be found in the software module):
cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
cat3 <- as.numeric(par3)
intercept<-as.logical(par4)
x <- t(x)
x1<-as.numeric(x[,cat1])
f1<-as.character(x[,cat2])
f2 <- as.character(x[,cat3])
xdf<-data.frame(x1,f1, f2)
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
(V3 <-dimnames(y)[[1]][cat3])
names(xdf)<-c('Response', 'Treatment_A', 'Treatment_B')
if(intercept == FALSE) (lmxdf<-lm(Response ~ Treatment_A * Treatment_B- 1, data = xdf) ) else (lmxdf<-lm(Response ~ Treatment_A * Treatment_B, data = xdf) )
(aov.xdf<-aov(lmxdf) )
(anova.xdf<-anova(lmxdf) )
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'ANOVA Model', length(lmxdf$coefficients)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, lmxdf$call['formula'],length(lmxdf$coefficients)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, 'means',,TRUE)
for(i in 1:length(lmxdf$coefficients)){
a<-table.element(a, round(lmxdf$coefficients[i], digits=3),,FALSE)
}
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable.tab')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'ANOVA Statistics', 5+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ',,TRUE)
a<-table.element(a, 'Df',,FALSE)
a<-table.element(a, 'Sum Sq',,FALSE)
a<-table.element(a, 'Mean Sq',,FALSE)
a<-table.element(a, 'F value',,FALSE)
a<-table.element(a, 'Pr(>F)',,FALSE)
a<-table.row.end(a)
for(i in 1 : length(rownames(anova.xdf))-1){
a<-table.row.start(a)
a<-table.element(a,rownames(anova.xdf)[i] ,,TRUE)
a<-table.element(a, anova.xdf$Df[1],,FALSE)
a<-table.element(a, round(anova.xdf$'Sum Sq'[i], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Mean Sq'[i], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'F value'[i], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Pr(>F)'[i], digits=3),,FALSE)
a<-table.row.end(a)
}
a<-table.row.start(a)
a<-table.element(a, 'Residuals',,TRUE)
a<-table.element(a, anova.xdf$'Df'[i+1],,FALSE)
a<-table.element(a, round(anova.xdf$'Sum Sq'[i+1], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Mean Sq'[i+1], digits=3),,FALSE)
a<-table.element(a, ' ',,FALSE)
a<-table.element(a, ' ',,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable1.tab')
bitmap(file='anovaplot.png')
boxplot(Response ~ Treatment_A + Treatment_B, data=xdf, xlab=V2, ylab=V1, main='Boxplots of ANOVA Groups')
dev.off()
bitmap(file='designplot.png')
xdf2 <- xdf # to preserve xdf make copy for function
names(xdf2) <- c(V1, V2, V3)
plot.design(xdf2, main='Design Plot of Group Means')
dev.off()
bitmap(file='interactionplot.png')
interaction.plot(xdf$Treatment_A, xdf$Treatment_B, xdf$Response, xlab=V2, ylab=V1, trace.label=V3, main='Possible Interactions Between Anova Groups')
dev.off()
if(intercept==TRUE){
thsd<-TukeyHSD(aov.xdf)
names(thsd) <- c(V2, V3, paste(V2, ':', V3, sep=''))
bitmap(file='TukeyHSDPlot.png')
layout(matrix(c(1,2,3,3), 2,2))
plot(thsd, las=1)
dev.off()
}
if(intercept==TRUE){
ntables<-length(names(thsd))
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tukey Honest Significant Difference Comparisons', 5,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1, TRUE)
for(i in 1:4){
a<-table.element(a,colnames(thsd[[1]])[i], 1, TRUE)
}
a<-table.row.end(a)
for(nt in 1:ntables){
for(i in 1:length(rownames(thsd[[nt]]))){
a<-table.row.start(a)
a<-table.element(a,rownames(thsd[[nt]])[i], 1, TRUE)
for(j in 1:4){
a<-table.element(a,round(thsd[[nt]][i,j], digits=3), 1, FALSE)
}
a<-table.row.end(a)
}
} # end nt
a<-table.end(a)
table.save(a,file='hsdtable.tab')
}#end if hsd tables
if(intercept==FALSE){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'TukeyHSD Message', 1,TRUE)
a<-table.row.end(a)
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Must Include Intercept to use Tukey Test ', 1, FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
library(car)
lt.lmxdf<-levene.test(lmxdf)
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Levenes Test for Homogeneity of Variance', 4,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,' ', 1, TRUE)
for (i in 1:3){
a<-table.element(a,names(lt.lmxdf)[i], 1, FALSE)
}
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Group', 1, TRUE)
for (i in 1:3){
a<-table.element(a,round(lt.lmxdf[[i]][1], digits=3), 1, FALSE)
}
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,' ', 1, TRUE)
a<-table.element(a,lt.lmxdf[[1]][2], 1, FALSE)
a<-table.element(a,' ', 1, FALSE)
a<-table.element(a,' ', 1, FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable3.tab')