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Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationTue, 31 Mar 2020 04:54:48 +0200
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2020/Mar/31/t1585623325u7t0iknrcjos06o.htm/, Retrieved Fri, 26 Apr 2024 04:44:26 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=319106, Retrieved Fri, 26 Apr 2024 04:44:26 +0000
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Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact121

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-       [Hierarchical Clustering] [] [2020-03-31 02:54:48] [d41d8cd98f00b204e9800998ecf8427e] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
Schinus johnstonii F.A. Barkley	0	0	1	0
Asparagus officinalis L. var. altilis L.	0	1	0	1
Anthemis cotula L.	0	1	0	0
Baccharis darwinii Hook. & Arn.	0	1	0	0
Baccharis juncea (Cass.) Desf. ssp. juncea	0	1	0	0
Baccharis spartioides (Hook. & Arn. ex DC.) J. Remy	0	1	0	1
Centaurea calcitrapa L.	1	1	0	0
Cichorium intybus L.	1	1	1	1
Cirsium vulgare (Savi) Ten.	0	1	1	0
Conyza bonariensis (L.) Cronquist var. angustifolia (Cabrera) Cabrera	1	1	0	1
Conyza bonariensis (L.) Cronquist var. bonariensis	1	1	1	1
Conyza sumatrensis (Retz.) E. Walker var. leiotheca (S.F. Blake) Pruski & G. Sancho	1	1	1	0
Flaveria bidentis (L.) Kuntze	1	0	0	0
Galinsoga parviflora Cav.	1	0	0	0
Gamochaeta americana (Mill.) Wedd.	0	0	1	0
Helminthotheca echioides (L.) Holub	1	1	0	0
Hypochaeris chondrilloides (A. Gray) Cabrera	1	1	0	0
Lactuca serriola L.	0	1	1	0
Pseudognaphalium leucopeplum (Cabrera) Anderb.	0	0	1	0
Rhaponticum repens (L.) Hidalgo	0	1	0	0
Senecio vulgaris L.	0	1	0	0
Sonchus oleraceus L.	1	1	1	0
Taraxacum officinale F.H. Wigg.	1	1	1	1
Tessaria absinthioides (Hook. & Arn.) DC.	1	1	1	1
Heliotropium curassavicum L. var. curassavicum	1	0	1	0
Eruca vesicaria (L.) Cav. ssp. sativa (Mill.) Thell.	0	1	0	0
Lepidium draba L.	0	1	1	0
Lepidium myrianthum Phil.	1	1	0	0
Rapistrum rugosum (L.) All.	0	1	0	0
Sisymbrium irio L.	0	1	0	0
Spergula platensis (Cambess.) Shinners var. platensis	1	0	0	0
Spergula salina (J. Presl & C. Presl) D. Dietr.	1	1	0	0
Atriplex heterosperma Bunge	1	1	1	0
Atriplex prostrata Boucher ex DC.	1	1	1	1
Atriplex semibaccata R. Br.	0	1	0	0
Atriplex suberecta I. Verd.	0	1	0	0
Bassia hyssopifolia (Pall.) Kuntze	1	0	1	1
Bassia scoparia (L.) A.J. Scott	1	1	1	1
Chenopodiastrum murale (L.) S. Fuentes, Uotila & Borsch	1	1	1	0
Chenopodium album L.	0	1	0	1
Chenopodium hircinum Schrad. ssp. hircinum	0	0	1	0
Sarcocornia neei (Lag.) M.A. Alonso & M.B. Crespo	1	0	0	0
Suaeda altissima (L.) Pall.	1	1	1	1
Suaeda densiflora A. Soriano ex Giusti	0	1	1	0
Convolvulus arvensis L.	1	1	1	0
Cressa truxillensis Kunth	1	1	0	0
Euphorbia serpens Kunth var. microphylla Müll. Arg.	0	1	1	0
Glycyrrhiza astragalina Gillies ex Hook. & Arn.	0	0	0	1
Hoffmannseggia glauca (Ortega) Eifert	1	1	0	1
Medicago sativa L.	1	1	1	0
Melilotus albus Desr.	1	1	1	1
Melilotus indicus (L.) All.	0	1	0	0
Prosopis strombulifera (Lam.) Benth. var. strombulifera	1	1	1	1
Trifolium repens L.	0	1	1	0
Vicia sativa L. ssp. sativa	0	0	0	1
Frankenia pulverulenta L.	1	1	0	0
Centaurium pulchellum (Sw.) Druce	0	1	0	1
Erodium cicutarium (L.) L'Hér. ex Aiton	0	1	0	0
Lamium amplexicaule L.	0	1	0	0
Lythrum hyssopifolium L.	0	1	0	0
Anoda cristata (L.) Schltdl.	0	1	1	0
Hibiscus trionum L.	1	0	0	0
Malva parviflora L.	0	1	0	1
Malvella leprosa (Ortega) Krapov.	1	1	1	1
Oenothera curtiflora W.L. Wagner & Hoch	0	1	0	0
Plantago lanceolata L.	1	1	1	1
Plantago major L.	0	0	0	1
Plantago myosuros Lam.	1	0	0	0
Veronica polita Fr.	0	1	0	0
Limonium brasiliense (Boiss.) Kuntze	0	0	1	0
Amelichloa caudata (Trin.) Arriaga & Barkworth	0	1	0	0
Avena byzantina K. Koch	0	1	0	0
Bromus catharticus Vahl var. catharticus	0	1	0	0
Bromus catharticus Vahl var. rupestris (Speg.) Planchuelo & P.M. Peterson	0	1	0	0
Cynodon dactylon (L.) Pers. var. dactylon	1	1	1	1
Distichlis scoparia (Kunth) Arechav. var. scoparia	1	1	0	1
Distichlis spicata (L.) Greene var. spicata	1	1	1	1
Echinochloa crus-galli (L.) P. Beauv. var. crus-galli	1	1	1	1
Eragrostis lugens Nees	0	1	1	0
Eragrostis pilosa (L.) P. Beauv.	1	0	0	0
Festuca arundinacea Schreb.	1	1	1	0
Hordeum euclaston Steud.	0	1	1	0
Hordeum lechleri (Steud.) Schenck	0	1	0	0
Hordeum murinum L. ssp. murinum	0	1	0	0
Hordeum stenostachys Godr.	1	1	1	0
Leptochloa fusca (L.) Kunth ssp. fusca	1	1	1	0
Lolium perenne L.	1	1	0	0
Lolium temulentum L.	1	0	0	0
Muhlenbergia asperifolia (Nees & Meyen ex Trin.) Parodi	0	1	1	1
Panicum capillare L.	1	0	0	1
Parapholis incurva (L.) C.E. Hubb.	0	1	0	0
Polypogon exasperatus (Trin.) Renvoize var. kuntzei (Mez) Finot	0	1	0	0
Polypogon imberbis (Phil.) Johow	1	1	0	0
Polypogon monspeliensis (L.) Desf.	0	1	0	0
Polypogon viridis (Gouan) Breistr.	0	1	0	0
Puccinellia glaucescens (Phil.) Parodi	1	1	0	1
Schismus arabicus Nees	0	1	0	0
Setaria parviflora (Poir.) Kerguélen var. parviflora	1	1	1	0
Setaria pumila (Poir.) Roem. & Schult.	1	1	1	0
Sorghum halepense (L.) Pers.	0	1	1	0
Thinopyrum ponticum (Podp.) Barkworth & D.R.Dewey	1	1	1	0
Polygonum aviculare L.	1	1	1	0
Polygonum persicaria L.	0	1	0	0
Rumex crispus L.	1	1	0	0
Portulaca oleracea L.	1	1	1	0
Galium aparine L.	1	0	0	0
Calibrachoa parviflora (Juss.) D'Arcy	1	0	1	1
Lycium chilense Miers ex Bertero var. filifolium (Gillies ex Miers) Bernardello	0	1	0	0
Solanum elaeagnifolium Cav.	0	1	0	0
Tamarix ramosissima Ledeb.	0	0	1	0
Tribulus terrestris L.	0	1	0	0

Tables (Output of Computation)





Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time0 seconds
R ServerBig Analytics Cloud Computing Center

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input view raw input (R code)  \tabularnewline
Raw Outputview raw output of R engine  \tabularnewline
Computing time0 seconds \tabularnewline
R ServerBig Analytics Cloud Computing Center \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=319106&T=0

[TABLE]
[ROW]
Summary of computational transaction[/C][/ROW] [ROW]Raw Input[/C] view raw input (R code) [/C][/ROW] [ROW]Raw Output[/C]view raw output of R engine [/C][/ROW] [ROW]Computing time[/C]0 seconds[/C][/ROW] [ROW]R Server[/C]Big Analytics Cloud Computing Center[/C][/ROW] [/TABLE] Source: https://freestatistics.org/blog/index.php?pk=319106&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=319106&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input view raw input (R code)
Raw Outputview raw output of R engine
Computing time0 seconds
R ServerBig Analytics Cloud Computing Center


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = average ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = average ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}