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Author's title

Author

*Unverified author*

R Software Module

rwasp_hierarchicalclustering.wasp

Title produced by software

Hierarchical Clustering

Date of computation

Mon, 16 Sep 2013 05:13:17 -0400

Cite this page as follows

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2013/Sep/16/t1379323311s8no6yblzikob6q.htm/, Retrieved Wed, 01 May 2024 22:13:44 +0000

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=211402, Retrieved Wed, 01 May 2024 22:13:44 +0000

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Original text written by user:

IsPrivate?

No (this computation is public)

User-defined keywords

Estimated Impact

127

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)

-       [Hierarchical Clustering] [] [2013-09-16 09:13:17] [d41d8cd98f00b204e9800998ecf8427e] [Current]

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Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Sir Maurice George Kendall' @ kendall.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Sir Maurice George Kendall' @ kendall.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=211402&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Sir Maurice George Kendall' @ kendall.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=211402&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=211402&T=0

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Sir Maurice George Kendall' @ kendall.wessa.net

Summary of Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	1
10	1
11	1
12	1
13	1
14	1
15	1
16	1
17	1
18	1
19	1
20	1
21	1
22	2
23	2
24	3
25	3
26	3
27	3
28	3
29	4
30	4
31	5
32	6
33	6
34	8
35	8
36	8
37	9
38	11
39	12
40	12
41	14
42	21
43	21
44	22
45	33
46	41
47	46
48	84
49	138

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 1 \tabularnewline
10 & 1 \tabularnewline
11 & 1 \tabularnewline
12 & 1 \tabularnewline
13 & 1 \tabularnewline
14 & 1 \tabularnewline
15 & 1 \tabularnewline
16 & 1 \tabularnewline
17 & 1 \tabularnewline
18 & 1 \tabularnewline
19 & 1 \tabularnewline
20 & 1 \tabularnewline
21 & 1 \tabularnewline
22 & 2 \tabularnewline
23 & 2 \tabularnewline
24 & 3 \tabularnewline
25 & 3 \tabularnewline
26 & 3 \tabularnewline
27 & 3 \tabularnewline
28 & 3 \tabularnewline
29 & 4 \tabularnewline
30 & 4 \tabularnewline
31 & 5 \tabularnewline
32 & 6 \tabularnewline
33 & 6 \tabularnewline
34 & 8 \tabularnewline
35 & 8 \tabularnewline
36 & 8 \tabularnewline
37 & 9 \tabularnewline
38 & 11 \tabularnewline
39 & 12 \tabularnewline
40 & 12 \tabularnewline
41 & 14 \tabularnewline
42 & 21 \tabularnewline
43 & 21 \tabularnewline
44 & 22 \tabularnewline
45 & 33 \tabularnewline
46 & 41 \tabularnewline
47 & 46 \tabularnewline
48 & 84 \tabularnewline
49 & 138 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=211402&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]1[/C][/ROW]
[ROW][C]10[/C][C]1[/C][/ROW]
[ROW][C]11[/C][C]1[/C][/ROW]
[ROW][C]12[/C][C]1[/C][/ROW]
[ROW][C]13[/C][C]1[/C][/ROW]
[ROW][C]14[/C][C]1[/C][/ROW]
[ROW][C]15[/C][C]1[/C][/ROW]
[ROW][C]16[/C][C]1[/C][/ROW]
[ROW][C]17[/C][C]1[/C][/ROW]
[ROW][C]18[/C][C]1[/C][/ROW]
[ROW][C]19[/C][C]1[/C][/ROW]
[ROW][C]20[/C][C]1[/C][/ROW]
[ROW][C]21[/C][C]1[/C][/ROW]
[ROW][C]22[/C][C]2[/C][/ROW]
[ROW][C]23[/C][C]2[/C][/ROW]
[ROW][C]24[/C][C]3[/C][/ROW]
[ROW][C]25[/C][C]3[/C][/ROW]
[ROW][C]26[/C][C]3[/C][/ROW]
[ROW][C]27[/C][C]3[/C][/ROW]
[ROW][C]28[/C][C]3[/C][/ROW]
[ROW][C]29[/C][C]4[/C][/ROW]
[ROW][C]30[/C][C]4[/C][/ROW]
[ROW][C]31[/C][C]5[/C][/ROW]
[ROW][C]32[/C][C]6[/C][/ROW]
[ROW][C]33[/C][C]6[/C][/ROW]
[ROW][C]34[/C][C]8[/C][/ROW]
[ROW][C]35[/C][C]8[/C][/ROW]
[ROW][C]36[/C][C]8[/C][/ROW]
[ROW][C]37[/C][C]9[/C][/ROW]
[ROW][C]38[/C][C]11[/C][/ROW]
[ROW][C]39[/C][C]12[/C][/ROW]
[ROW][C]40[/C][C]12[/C][/ROW]
[ROW][C]41[/C][C]14[/C][/ROW]
[ROW][C]42[/C][C]21[/C][/ROW]
[ROW][C]43[/C][C]21[/C][/ROW]
[ROW][C]44[/C][C]22[/C][/ROW]
[ROW][C]45[/C][C]33[/C][/ROW]
[ROW][C]46[/C][C]41[/C][/ROW]
[ROW][C]47[/C][C]46[/C][/ROW]
[ROW][C]48[/C][C]84[/C][/ROW]
[ROW][C]49[/C][C]138[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=211402&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=211402&T=1

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	1
10	1
11	1
12	1
13	1
14	1
15	1
16	1
17	1
18	1
19	1
20	1
21	1
22	2
23	2
24	3
25	3
26	3
27	3
28	3
29	4
30	4
31	5
32	6
33	6
34	8
35	8
36	8
37	9
38	11
39	12
40	12
41	14
42	21
43	21
44	22
45	33
46	41
47	46
48	84
49	138

Figure 1

PNG link

Postscript link

PDF link

Figure 2

PNG link

Postscript link

PDF link

Parameters (Session):

par1 = complete ; par2 = ALL ; par3 = FALSE ; par4 = TRUE ;

Parameters (R input):

par1 = complete ; par2 = ALL ; par3 = FALSE ; par4 = TRUE ;

R code (references can be found in the software module):

par4 <- 'TRUE'
par3 <- 'FALSE'
par2 <- '2'
par1 <- 'mcquitty'
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}

Free Statistics

Description of Statistical Computation

Tree of Dependent Computations

Dataset

Tables (Output of Computation)

Figures (Output of Computation)

Input Parameters & R Code